Gene omics information

Query gene ID	HM08L19r_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.86	94.8	HM08L19r_at	HM08L19r	-	-	3e-2	At3g09980	unknown protein	S.X.	H.G.	Please select
0.90	95.7	Contig11234_at	Contig11234	-	-	7e+0	At4g14305	-	S.X.	H.G.	Please select
0.87	95.0	Contig24203_at	Contig24203	-	-	1e+1	At5g27090	AGL54	S.X.	H.G.	Please select
0.86	94.8	Contig26356_at	Contig26356	-	-	3e-7	At5g23810	AAP7	S.X.	H.G.	Please select
0.84	94.3	Contig25667_s_at	Contig25667	-	-	7e-1	At1g24000	Bet v I allergen family protein	S.X.	H.G.	Please select
0.78	91.2	HT13L01r_at	HT13L01r	-	-	3e+0	At5g49010	SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5)	S.X.	H.G.	Please select
0.75	89.5	HVSMEm0012M15r2_at	HVSMEm0012M15r2	-	-	2e+0	At5g27247	unknown protein	S.X.	H.G.	Please select
0.70	86.0	HT10B20u_at	HT10B20u	-	-	1e+0	At5g56600	PRF3 (PROFILIN 3)	S.X.	H.G.	Please select
0.60	77.3	Contig17965_at	Contig17965	-	-	2e-17	At3g15352	ATCOX17	S.X.	H.G.	Please select
0.58	74.9	HB27G16r_at	HB27G16r	-	-	8e-1	At5g06010	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
36.2	99.9	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
35.1	99.9	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
32.5	99.9	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
25.8	99.8	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
19.1	99.7	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains
16.8	99.6	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
15.1	99.5	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
13.6	99.5	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
13.1	99.4	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.4	98.5	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	2e-2	38	Contig18209_at	Contig18209	-	-	2e+0	At3g26080	plastid-lipid associated protein PAP / fibrillin family protein	C.G.	S.X.	Please select
0.12	2e-2	38	Contig25984_at	Contig25984	-	-	9e-1	At4g24380	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	34	Contig10443_at	Contig10443	-	-	8e-14	At5g09880	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.02	3e-1	34	Contig17222_at	Contig17222	-	-	4e-12	At1g08090	ATNRT2:1 (NITRATE TRANSPORTER 2:1)	C.G.	S.X.	Please select
0.04	3e-1	34	Contig3759_s_at	Contig3759	-	-	3e-29	At3g12860	nucleolar protein Nop56, putative	C.G.	S.X.	Please select
0.02	3e-1	34	Contig3757_at	Contig3757	-	-	1e-30	At3g12860	nucleolar protein Nop56, putative	C.G.	S.X.	Please select
0.04	1e+0	32	HM07G04r_at	HM07G04r	-	-	2e-1	At5g46780	VQ motif-containing protein	C.G.	S.X.	Please select
0.02	1e+0	32	Contig15322_at	Contig15322	-	-	3e+0	At5g13910	LEP (LEAFY PETIOLE)	C.G.	S.X.	Please select
0.02	1e+0	32	Contig3057_s_at	Contig3057	-	-	8e-4	At1g22990	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e-2	38	Arabidopsis thaliana	At3g09980	820159	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e+0	32	Glycine max	PsAffx.psZS008xC17f_at	PsAffx.psZS008xC17f	-	-	7e-4	At1g12665	-	C.G.	S.X.	Please select
0.03	1e+0	34	Oryza sativa	Os04g0234200	9632.m01494	-	-	1e+0	At3g15115	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	5e-2	38	Populus trichocarpa	PtpAffx.209805.1.S1_at	pmrna19341	hypothetical protein	-	1e-36	At3g13070	CBS domain-containing protein / transporter associated domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	2e-4	46	Triticum aestivum	TaAffx.12708.2.S1_at	BJ242787	-	-	1e+0	At5g50090	unknown protein	C.G.	S.X.	Please select
0.04	2e-1	34	Vitis vinifera	1618225_at	CF212645	-	-	1e-9	At1g78770	cell division cycle family protein	C.G.	S.X.	Please select
0.04	4e+0	30	Zea mays	ZmAffx.510.1.A1_at	AI692008	hypothetical protein LOC100273006	-	3e+0	At4g14380	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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