Gene omics information

Query gene ID	HM02C20u_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	HM02C20u_at	HM02C20u	-	-	1e+0	At5g48920	TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)	S.X.	H.G.	Please select
0.50	66.9	HVSMEf0014C12r2_s_at	HVSMEf0014C12r2	-	-	1e+1	At5g03840	TFL1 (TERMINAL FLOWER 1)	S.X.	H.G.	Please select
0.40	53.1	Contig4579_s_at	Contig4579	-	-	2e-9	At5g21150	PAZ domain-containing protein / piwi domain-containing protein	S.X.	H.G.	Please select
0.36	47.1	HVSMEf0011J16r2_at	HVSMEf0011J16r2	-	-	1e+0	At1g58100	TCP family transcription factor, putative	S.X.	H.G.	Please select
0.15	14.1	HVSMEm0001B03r2_at	HVSMEm0001B03r2	-	-	7e-2	At3g42150	unknown protein	S.X.	H.G.	Please select
0.13	11.6	HW06C04u_x_at	HW06C04u	-	-	7e+0	At3g05980	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.4	99.9	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
19.8	99.7	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
15.9	99.6	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
12.9	99.4	GSM398250	Martin_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.9	99.1	GSM398252	Martin_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.7	99.0	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
7.8	98.6	GSM398253	Martin_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.9	98.3	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.6	97.7	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.4	97.5	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	36	Contig17784_at	Contig17784	-	-	6e-1	At2g27030	CAM5 (CALMODULIN 5)	C.G.	S.X.	Please select
0.04	5e-1	34	Contig19483_at	Contig19483	-	-	8e-39	At1g07170	-	C.G.	S.X.	Please select
0.03	5e-1	34	Contig9769_at	Contig9769	-	-	3e-23	At2g30000	-	C.G.	S.X.	Please select
0.02	2e+0	32	Contig16382_s_at	Contig16382	-	-	2e+0	At3g18530	binding	C.G.	S.X.	Please select
0.01	2e+0	32	Contig8296_at	Contig8296	-	-	2e-4	At1g20110	zinc finger (FYVE type) family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig16382_at	Contig16382	-	-	2e+0	At3g18530	binding	C.G.	S.X.	Please select
0.03	2e+0	32	HS08H22u_s_at	HS08H22u	-	-	5e+0	At4g27780	ACBP2 (ACYL-COA BINDING PROTEIN ACBP 2)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig14573_at	Contig14573	-	-	1e-2	At1g04300	-	C.G.	S.X.	Please select
0.03	7e+0	30	HVSMEn0004H06r2_at	HVSMEn0004H06r2	-	-	4e-16	At2g18390	TTN5 (TITAN 5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At5g48920	834950	TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)	F:molecular_function unknown;P:secondary cell wall biogenesis;C:unknown;MPOBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e+0	32	Glycine max	PsAffx.CL2442Contig1_s_at	PsAffx.CL2442Contig1	-	-	1e+0	At1g12665	-	C.G.	S.X.	Please select
0.14	5e-7	56	Oryza sativa	Os02g0156300	AK058558.1	-	Conserved hypothetical protein	1e-1	At3g13580	60S ribosomal protein L7 (RPL7D)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e-1	36	Populus trichocarpa	PtpAffx.138581.1.A1_at	DN492072	hypothetical protein	-	9e-3	At3g14850	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.24	2e-2	40	Triticum aestivum	TaAffx.38540.1.A1_at	BJ220328	-	-	4e+0	At3g18300	unknown protein	C.G.	S.X.	Please select
0.05	1e+0	32	Vitis vinifera	1618969_at	CD798426	hypothetical protein LOC100262654	-	2e-3	At2g42700	-	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	ZmAffx.886.1.A1_at	AI770831	-	-	8e-1	At5g22220	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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