Gene omics information

Query gene ID	HM01F24T_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	89.5	HM01F24T_s_at	HM01F24T	-	-	4e-5	At2g33370	60S ribosomal protein L23 (RPL23B)	S.X.	H.G.	Please select
0.86	94.8	Contig10241_at	Contig10241	-	-	2e-9	At1g29120	unknown protein	S.X.	H.G.	Please select
0.83	94.0	Contig23530_s_at	Contig23530	-	-	8e+0	At3g57072	unknown protein	S.X.	H.G.	Please select
0.77	90.8	Contig20949_at	Contig20949	-	-	2e+0	At4g34150	C2 domain-containing protein	S.X.	H.G.	Please select
0.67	84.7	Contig14763_at	Contig14763	-	-	2e-1	At2g37510	RNA-binding protein, putative	S.X.	H.G.	Please select
0.67	84.7	HY09M22u_s_at	HY09M22u	-	-	3e+0	At2g04378	beta-galactosidase	S.X.	H.G.	Please select
0.50	66.9	Contig19492_at	Contig19492	-	-	5e-1	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.6	95.3	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.5	95.1	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.2	94.3	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.2	94.3	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.1	94.1	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.0	93.8	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.0	93.8	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.54	3e-146	515	Contig1909_s_at	Contig1909	-	-	3e-97	At2g33370	60S ribosomal protein L23 (RPL23B)	C.G.	S.X.	Please select
0.63	3e-87	319	HI05M04r_s_at	HI05M04r	-	-	1e-23	At2g33370	60S ribosomal protein L23 (RPL23B)	C.G.	S.X.	Please select
0.11	2e-8	57	Contig1908_s_at	Contig1908	-	-	2e-54	At2g33370	60S ribosomal protein L23 (RPL23B)	C.G.	S.X.	Please select
0.11	2e-5	48	EBpi03_SQ003_A03_s_at	EBpi03_SQ003_A03	-	-	6e-4	At2g33370	60S ribosomal protein L23 (RPL23B)	C.G.	S.X.	Please select
0.07	2e-5	48	Contig1910_at	Contig1910	-	-	6e-52	At1g04480	60S ribosomal protein L23 (RPL23A)	C.G.	S.X.	Please select
0.06	2e-2	38	Contig25979_at	Contig25979	-	-	4e-6	At3g04400	emb2171 (embryo defective 2171)	C.G.	S.X.	Please select
0.03	3e-1	34	Contig5102_s_at	Contig5102	-	-	1e+0	At3g04640	glycine-rich protein	C.G.	S.X.	Please select
0.01	1e+0	32	Contig6144_at	Contig6144	-	-	6e-42	At4g24620	PGI1 (PHOSPHOGLUCOSE ISOMERASE 1)	C.G.	S.X.	Please select
0.02	1e+0	32	Contig5528_at	Contig5528	-	-	2e-1	At1g21530	AMP-binding protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	4e-5	48	Arabidopsis thaliana	At2g33370	817900	60S ribosomal protein L23 (RPL23B)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, nucleolus;BOPMAF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	1e-5	50	Glycine max	GmaAffx.60960.1.A1_at	BU763513	-	-	1e-40	At2g33370	60S ribosomal protein L23 (RPL23B)	C.G.	S.X.	Please select
0.08	3e-7	56	Oryza sativa	Os03g0139100	BE040126	-	60S ribosomal protein L23	3e-67	At1g04480	60S ribosomal protein L23 (RPL23A)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	1e-2	40	Populus trichocarpa	PtpAffx.204275.1.S1_at	pmrna8407	hypothetical protein	-	4e-27	At1g04480	60S ribosomal protein L23 (RPL23A)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.35	4e-54	210	Triticum aestivum	Ta.14635.2.S1_a_at	BJ225605	Ribosomal Pr 117	-	1e-75	At2g33370	60S ribosomal protein L23 (RPL23B)	C.G.	S.X.	Please select
0.10	3e-12	69	Vitis vinifera	1607660_at	CA812263	similar to ribosomal protein L17	-	6e-80	At1g04480	60S ribosomal protein L23 (RPL23A)	C.G.	S.X.	Please select
0.10	1e-9	61	Zea mays	Zm.12634.5.S1_x_at	BQ539541	-	-	3e-14	At1g04480	60S ribosomal protein L23 (RPL23A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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