Gene omics information

Query gene ID	HK05N20r_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	HK05N20r_at	HK05N20r	-	-	3e+0	Atcg00790	-	S.X.	H.G.	Please select
0.59	75.8	HVSMEc0011A22r2_at	HVSMEc0011A22r2	-	-	1e+0	At2g41920	protein kinase family protein	S.X.	H.G.	Please select
0.59	75.8	HVSMEc0013C11r2_at	HVSMEc0013C11r2	-	-	7e-2	At2g05600	-	S.X.	H.G.	Please select
0.57	74.9	HVSMEc0010O09r2_at	HVSMEc0010O09r2	-	-	1e+0	At5g28630	glycine-rich protein	S.X.	H.G.	Please select
0.55	72.0	Contig10750_at	Contig10750	-	-	1e-4	At1g51600	TIFY2A	S.X.	H.G.	Please select
0.44	58.9	Contig22141_at	Contig22141	-	-	3e+0	At3g07440	unknown protein	S.X.	H.G.	Please select
0.42	55.2	Contig15729_at	Contig15729	-	-	3e-2	At3g11280	myb family transcription factor	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.7	99.4	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
11.0	99.2	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
10.6	99.2	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
10.0	99.1	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
10.0	99.1	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
7.1	98.4	GSM261027	ABA-Late-rep1	GSE10328	ABA experiment
7.1	98.4	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment
6.5	98.2	GSM68893	3 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
6.3	98.1	GSM261028	ABA-Late-rep2	GSE10328	ABA experiment
6.0	97.9	GSM160822	38% SWC rep3	GSE6990	Barley drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	7e-138	488	Contig10315_at	Contig10315	-	-	1e+0	At4g24015	zinc finger (RING-H2 type) protein-related	C.G.	S.X.	Please select
0.57	7e-107	385	Contig10316_s_at	Contig10316	-	-	9e-1	At2g38690	unknown protein	C.G.	S.X.	Please select
0.03	5e-3	40	Contig11738_at	Contig11738	-	-	5e-63	Atcg00780	-	C.G.	S.X.	Please select
0.03	3e-1	34	Contig14011_at	Contig14011	-	-	1e-1	At2g05400	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.03	5e+0	30	Contig11157_at	Contig11157	-	-	1e-9	At5g20165	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	HV02C03u_at	HV02C03u	-	-	4e+0	At5g10580	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	30	Contig14075_at	Contig14075	-	-	6e-33	At2g41560	ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)	C.G.	S.X.	Please select
0.03	5e+0	30	Contig17126_at	Contig17126	-	-	4e-1	At3g53450	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	Contig15015_at	Contig15015	-	-	2e-10	At2g35155	catalytic	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e+0	32	Arabidopsis thaliana	Atcg00790	-	-	chloroplast gene encoding a ribosomal protein L16, which is a constituent of 50S large ribosomal subunit	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	GmaAffx.59620.1.S1_at	BI788344	-	-	8e-1	At5g16920	-	C.G.	S.X.	Please select
0.05	5e+0	32	Oryza sativa	OsAffx.32337.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	9e-1	34	Populus trichocarpa	PtpAffx.32412.2.S1_at	CK090367	hypothetical protein	-	1e+1	Atcg01090	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.37	2e-16	85	Triticum aestivum	TaAffx.36669.1.A1_at	BJ320776	-	-	1e+0	At4g13020	MHK	C.G.	S.X.	Please select
0.06	3e+0	30	Vitis vinifera	1620835_at	BQ800355	-	-	6e-1	At3g45443	unknown protein	C.G.	S.X.	Please select
0.05	3e-1	34	Zea mays	Zm.12547.1.A1_at	AI622168	RNA binding protein	-	1e-3	At4g03110	RNA-binding protein, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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