CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID HI04D10u_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.64 80.9 HI04D10u_at HI04D10u - - 7e-42 At5g02960 40S ribosomal protein S23 (RPS23B) S.X. H.G.
0.63 80.3 Contig6594_at Contig6594 - - 2e-15 At2g03890 phosphatidylinositol 3- and 4-kinase family protein S.X. H.G.
0.35 45.1 Contig19752_at Contig19752 - - 1e+0 At2g01340 unknown protein S.X. H.G.
0.35 45.1 Contig6797_at Contig6797 - - 7e+0 At4g19980 unknown protein S.X. H.G.
0.33 42.6 Contig13606_s_at Contig13606 - - 8e-1 At1g15710 prephenate dehydrogenase family protein S.X. H.G.
0.32 40.3 Contig20140_at Contig20140 - - 2e-1 At5g12310 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.31 38.6 Contig19545_at Contig19545 - - 4e-2 At5g53260 seed maturation family protein S.X. H.G.
0.30 37.0 Contig2594_s_at Contig2594 - - 4e-42 At5g10860 CBS domain-containing protein S.X. H.G.
0.29 35.5 Contig8657_at Contig8657 - - 7e-10 At5g58740 nuclear movement family protein S.X. H.G.
0.22 24.2 Contig1697_s_at Contig1697 - - 1e-6 At5g46430 60S ribosomal protein L32 (RPL32B) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
38.7 99.9 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
26.7 99.8 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
11.5 99.3 GSM431548 pathogen isolates: Mock - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
11.1 99.2 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
10.5 99.2 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
10.5 99.2 GSM282028 Malting_day1_Merit_rep1 GSE11200 Expression data from malting barley seeds
9.5 99.0 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
9.5 99.0 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
9.4 99.0 GSM238438 Embryo 72 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.9 98.9 GSM282029 Malting_day1_Merit_rep3 GSE11200 Expression data from malting barley seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.69 0 900 Contig2092_s_at Contig2092 - - 1e-62 At5g02960 40S ribosomal protein S23 (RPS23B) C.G. S.X.
0.69 2e-157 553 Contig2098_at Contig2098 - - 3e-60 At5g02960 40S ribosomal protein S23 (RPS23B) C.G. S.X.
0.37 1e-78 291 Contig2094_s_at Contig2094 - - 3e-100 At5g02960 40S ribosomal protein S23 (RPS23B) C.G. S.X.
0.33 8e-74 276 Contig2097_at Contig2097 - - 2e-95 At5g02960 40S ribosomal protein S23 (RPS23B) C.G. S.X.
0.38 8e-74 276 Contig2093_s_at Contig2093 - - 3e-88 At5g02960 40S ribosomal protein S23 (RPS23B) C.G. S.X.
0.01 5e-1 34 Contig5847_at Contig5847 - - 3e-13 At5g62890 permease, putative C.G. S.X.
0.02 2e+0 32 Contig4113_at Contig4113 - - 2e+0 At4g29190 zinc finger (CCCH-type) family protein C.G. S.X.
0.02 2e+0 32 Contig13483_at Contig13483 - - 1e-1 At4g25640 MATE efflux family protein C.G. S.X.
0.01 2e+0 32 Contig12756_at Contig12756 - - 1e-21 At2g34090 MEE18 (maternal effect embryo arrest 18) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.47 7e-42 171 Arabidopsis thaliana At5g02960 831724 40S ribosomal protein S23 (RPS23B) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome;BOPMFA - - - C.G. S.X.
0.44 4e-38 159 Glycine max HgAffx.17827.1.S1_at CB374329 - - 6e-30 At5g02960 40S ribosomal protein S23 (RPS23B) C.G. S.X.
0.36 1e-75 284 Oryza sativa Os.26532.2.S1_x_at - - - 0 C.G. S.X.
0.34 5e-16 85 Populus trichocarpa Ptp.1414.1.S1_at CV229232 hypothetical protein - 3e-97 At3g09680 40S ribosomal protein S23 (RPS23A) C.G. S.X.
0.62 6e-135 480 Triticum aestivum Ta.19321.1.S1_at CD871367 - - 7e-49 At5g02960 40S ribosomal protein S23 (RPS23B) C.G. S.X.
0.36 8e-36 149 Vitis vinifera 1621433_s_at CD801322 hypothetical protein LOC100265528 - 2e-64 At5g02960 40S ribosomal protein S23 (RPS23B) C.G. S.X.
0.40 8e-80 295 Zea mays Zm.6444.2.A1_at BM379891 hypothetical protein LOC100192600 - 8e-64 At5g02960 40S ribosomal protein S23 (RPS23B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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