Gene omics information

Query gene ID	HI01B18w_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	78.7	HI01B18w_s_at	HI01B18w	-	-	1e+0	At3g21270	ADOF2	S.X.	H.G.	Please select
0.40	53.1	Contig13546_at	Contig13546	-	-	3e+0	At3g62528	unknown protein	S.X.	H.G.	Please select
0.33	42.6	Contig13282_at	Contig13282	-	-	5e-8	At1g30540	ATPase, BadF/BadG/BcrA/BcrD-type family	S.X.	H.G.	Please select
0.31	38.6	Contig8951_at	Contig8951	-	-	9e-4	At4g00090	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.21	22.6	Contig7098_at	Contig7098	-	-	1e-2	At1g56360	PAP6 (PURPLE ACID PHOSPHATASE 6)	S.X.	H.G.	Please select
0.15	14.1	Contig12105_at	Contig12105	-	-	2e-2	At3g52640	nicastrin-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.0	99.1	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
9.7	99.0	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
9.5	99.0	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
8.6	98.8	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
8.0	98.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.5	98.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.3	98.1	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
6.2	98.0	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.6	97.7	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
5.4	97.5	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	5e-48	190	Contig6781_at	Contig6781	-	-	7e+0	At5g20650	COPT5	C.G.	S.X.	Please select
0.39	1e-42	173	Contig6780_at	Contig6780	-	-	5e-1	At4g29080	PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig9448_at	Contig9448	-	-	2e-6	At5g02060	integral membrane protein, putative	C.G.	S.X.	Please select
0.03	6e-1	34	Contig20248_at	Contig20248	-	-	5e+0	At3g16880	F-box protein-related	C.G.	S.X.	Please select
0.01	6e-1	34	Contig8366_at	Contig8366	-	-	4e-3	At3g52170	DNA binding	C.G.	S.X.	Please select
0.01	3e+0	32	Contig15230_at	Contig15230	-	-	2e-11	At5g59430	TRP1 (TELOMERIC REPEAT BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig7481_at	Contig7481	-	-	2e-2	At2g36080	DNA-binding protein, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Contig16998_at	Contig16998	-	-	4e-13	At5g04870	CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig1813_s_at	Contig1813	-	-	1e-121	At5g55190	RAN3 (RAN GTPASE 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At3g21270	821681	ADOF2	Encodes Dof zinc finger protein adof2.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-1	38	Glycine max	Gma.7638.1.S1_at	BQ628101	-	-	1e-1	At1g71235	unknown protein	C.G.	S.X.	Please select
0.14	3e-9	63	Oryza sativa	Os03g0408500	CF314141	-	Transcription factor TAFII-31 domain containingprotein	2e+0	At4g33640	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-1	38	Populus trichocarpa	PtpAffx.41063.1.S1_s_at	CK106090	hypothetical protein	-	1e+0	At1g35210	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.50	8e-101	367	Triticum aestivum	Ta.5900.1.S1_x_at	CA598212	-	-	1e-1	At4g21970	unknown protein	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1621562_at	CF404276	-	-	4e-3	At2g44080	ARL (ARGOS-LIKE)	C.G.	S.X.	Please select
0.15	2e-6	52	Zea mays	Zm.3685.1.S1_at	CF040303	hypothetical protein LOC100191949	-	2e+0	At3g56110	PRA1.B1 (PRENYLATED RAB ACCEPTOR 1.B1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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