Gene omics information

Query gene ID	HF01J12w_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	HF01J12w_s_at	HF01J12w	-	-	4e-1	At2g32310	-	S.X.	H.G.	Please select
0.91	98.1	Contig3337_s_at	Contig3337	-	-	5e-50	At5g59840	Ras-related GTP-binding family protein	S.X.	H.G.	Please select
0.83	94.0	Contig5153_at	Contig5153	chloroplast inner envelope protein-like	-	3e+0	At5g46860	VAM3	S.X.	H.G.	Please select
0.80	92.5	Contig2776_at	Contig2776	-	-	5e-20	At3g22890	APS1 (ATP SULFURYLASE 1)	S.X.	H.G.	Please select
0.47	62.2	rbags5f04_s_at	rbags5f04	-	-	2e+0	At3g61678	unknown protein	S.X.	H.G.	Please select
0.35	45.1	Contig8498_at	Contig8498	-	-	6e-8	At4g36390	radical SAM domain-containing protein / TRAM domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.7	98.3	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.6	98.2	GSM261056	Xantha b-12 Cotrol rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.5	98.2	GSM261063	Xantha s-46 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.1	98.0	GSM261057	Xantha b-12 Cotrol rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.9	97.9	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.8	97.8	GSM261062	Xantha s-46 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.7	97.7	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.3	97.4	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.1	97.3	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	5e-101	365	Contig2771_at	Contig2771	-	-	2e+0	At1g65210	-	C.G.	S.X.	Please select
0.14	3e-96	349	Contig2772_s_at	Contig2772	-	-	4e-50	At5g49910	CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2)	C.G.	S.X.	Please select
0.04	5e-2	36	Contig25849_at	Contig25849	-	-	3e-1	At1g51110	plastid-lipid associated protein PAP / fibrillin family protein	C.G.	S.X.	Please select
0.01	2e-1	34	Contig3761_at	Contig3761	-	-	3e-32	At2g36390	SBE2.1 (starch branching enzyme 2.1)	C.G.	S.X.	Please select
0.03	3e+0	30	Contig1063_s_at	Contig1063	-	-	1e-74	At1g31340	RUB1 (RELATED TO UBIQUITIN 1)	C.G.	S.X.	Please select
0.03	3e+0	30	Contig15345_at	Contig15345	-	-	7e-3	At5g05070	zinc ion binding	C.G.	S.X.	Please select
0.04	3e+0	30	Contig20401_at	Contig20401	-	-	3e-1	At3g63350	AT-HSFA7B	C.G.	S.X.	Please select
0.03	3e+0	30	HF01P16w_at	HF01P16w	-	-	1e+0	At1g24450	NFD2 (NUCLEAR FUSION DEFECTIVE 2)	C.G.	S.X.	Please select
0.01	3e+0	30	AF064561_at	AF064561	-	-	9e-79	At5g03650	SBE2.2 (starch branching enzyme 2.2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-1	34	Arabidopsis thaliana	At2g32310	817792	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	9e+0	30	Glycine max	GmaAffx.85966.1.S1_s_at	BF423860	-	-	9e+0	At5g43285	-	C.G.	S.X.	Please select
0.02	3e+0	32	Oryza sativa	OsAffx.4726.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	6e-1	34	Populus trichocarpa	PtpAffx.16175.1.S1_at	DN496213	-	-	9e-1	At3g48209	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	2e-62	238	Triticum aestivum	Ta.6049.1.S1_at	CK161776	-	-	4e-38	At5g49910	CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2)	C.G.	S.X.	Please select
0.04	5e-1	32	Vitis vinifera	1619275_at	CD719505	-	-	3e-1	At1g63855	unknown protein	C.G.	S.X.	Please select
0.05	7e-1	32	Zea mays	Zm.1759.1.A1_at	AW424833	hypothetical protein LOC100279904	-	3e+0	At5g52970	thylakoid lumen 15.0 kDa protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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