Gene omics information

Query gene ID	HD13H12r_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	HD13H12r_s_at	HD13H12r	-	-	2e-1	At3g28710	H+-transporting two-sector ATPase, putative	S.X.	H.G.	Please select
0.91	98.1	Contig24657_at	Contig24657	-	-	2e-2	At5g18940	Mo25 family protein	S.X.	H.G.	Please select
0.86	94.8	Contig2990_at	Contig2990	-	-	1e-4	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	S.X.	H.G.	Please select
0.82	93.1	rbaal22l07_s_at	rbaal22l07	vacuolar ATPase B subunit	-	1e-1	At3g44100	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	S.X.	H.G.	Please select
0.78	91.2	HVSMEg0011K10r2_x_at	HVSMEg0011K10r2	-	-	3e+0	At2g30695	-	S.X.	H.G.	Please select
0.78	91.2	Contig3659_at	Contig3659	-	-	3e-7	At4g29060	emb2726 (embryo defective 2726)	S.X.	H.G.	Please select
0.67	84.7	rbah59f07_s_at	rbah59f07	-	-	4e+0	At3g24160	PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)	S.X.	H.G.	Please select
0.64	80.9	Contig682_s_at	Contig682	-	-	9e-13	At3g10410	scpl49 (serine carboxypeptidase-like 49)	S.X.	H.G.	Please select
0.63	80.3	Contig30_s_at	Contig30	-	-	4e-19	At5g59690	histone H4	S.X.	H.G.	Please select
0.61	78.7	Contig3558_s_at	Contig3558	-	-	2e-15	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.6	95.3	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.1	94.1	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.9	93.4	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.9	93.4	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
2.8	93.1	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.7	92.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.7	92.7	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.7	92.7	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.7	92.7	GSM398270	HS41-1_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.6	92.3	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	874	HD13H12r_at	HD13H12r	-	-	2e-1	At3g28710	H+-transporting two-sector ATPase, putative	C.G.	S.X.	Please select
0.38	0	686	Contig2986_at	Contig2986	-	-	1e-39	At3g28710	H+-transporting two-sector ATPase, putative	C.G.	S.X.	Please select
0.03	4e-4	44	Contig16356_at	Contig16356	-	-	2e+0	At5g19200	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.02	4e-1	34	Contig14188_at	Contig14188	-	-	2e+0	At1g30757	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Contig4602_at	Contig4602	-	-	3e-28	At3g21280	UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig11574_at	Contig11574	-	-	6e-4	At3g54110	PUMP1 (PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1)	C.G.	S.X.	Please select
0.04	2e+0	32	HVSMEa0019P15r2_at	HVSMEa0019P15r2	-	-	7e-8	At5g14780	FDH (FORMATE DEHYDROGENASE)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig9053_at	Contig9053	-	-	5e-20	At4g36750	quinone reductase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig4601_s_at	Contig4601	-	-	4e-5	At3g21280	UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e-1	36	Arabidopsis thaliana	At3g28710	822502	H+-transporting two-sector ATPase, putative	F:hydrogen ion transmembrane transporter activity, proton-transporting ATPase activity, rotational mechanism;P:proton transport, ATP synthesis coupled proton transport;C:vacuolar membrane, plasma membrane, vacuole, plant-type vacuole;MFOPAB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e+0	32	Glycine max	GmaAffx.21292.1.S1_at	AW705326	-	-	8e-1	At4g21950	unknown protein	C.G.	S.X.	Please select
0.13	3e-5	50	Oryza sativa	Os01g0587000	AK067605.1	-	Vacuolar ATP synthase subunit d (EC 3.6.3.14)(V-ATPase d subunit) (Vacuolar proton pump d subunit)(V-ATPase 41 KDa accessory protein) (DVA41)	2e-75	At3g28710	H+-transporting two-sector ATPase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e+0	32	Populus trichocarpa	PtpAffx.39069.1.S1_at	CK097783	hypothetical protein	-	1e+0	At4g00850	GIF3 (GRF1-INTERACTING FACTOR 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.53	3e-136	484	Triticum aestivum	Ta.10310.1.S1_a_at	BJ238630	Vacuolar proton-ATPase D subunit	-	1e-26	At3g28715	H+-transporting two-sector ATPase, putative	C.G.	S.X.	Please select
0.03	7e-5	46	Vitis vinifera	1612360_at	CB970071	hypothetical protein LOC100244110	-	2e-152	At3g28710	H+-transporting two-sector ATPase, putative	C.G.	S.X.	Please select
0.13	4e-13	73	Zea mays	Zm.5094.1.S1_at	AY104603.1	hypothetical protein LOC100280083	-	2e-100	At3g28715	H+-transporting two-sector ATPase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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