CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID HD10C22r_x_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.86 94.8 HD10C22r_x_at HD10C22r - - 2e-3 At3g12130 KH domain-containing protein / zinc finger (CCCH type) family protein S.X. H.G.
0.46 61.0 Contig1140_at Contig1140 - - 3e-17 At1g07790 HTB1 S.X. H.G.
0.22 24.2 Contig21965_at Contig21965 - - 2e+0 At2g13720 ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) S.X. H.G.
0.12 10.4 Contig8795_at Contig8795 - - 6e-1 At2g26500 cytochrome b6f complex subunit (petM), putative S.X. H.G.
0.07 5.8 Contig7265_s_at Contig7265 - - 1e-57 At5g47080 CKB1 S.X. H.G.
0.03 2.6 Contig15746_at Contig15746 - - 2e+0 At1g73890 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.03 2.6 Contig484_x_at Contig484 - - 1e-38 At1g09200 histone H3 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.3 99.6 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
16.0 99.6 GSM213443 Barley seeds with P. aeruginosa PA5021 mutant for 12hr GSE8618 P. aeruginosa virulent factor to barley
13.1 99.4 GSM213436 Barley seeds with P. aeruginosa PAO1 for 12hr GSE8618 P. aeruginosa virulent factor to barley
11.6 99.3 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.2 99.1 GSM261067 Xantha s-46 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.0 98.7 GSM261077 Albina e-16 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.0 98.7 GSM261078 Albina e-16 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.4 98.5 GSM261066 Xantha s-46 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.8 98.3 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.4 98.1 GSM261065 Xantha s-46 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.93 8e-162 567 HD10C22r_s_at HD10C22r - - 2e-3 At3g12130 KH domain-containing protein / zinc finger (CCCH type) family protein C.G. S.X.
0.37 3e-140 496 Contig6866_at Contig6866 - - 1e-2 At3g12130 KH domain-containing protein / zinc finger (CCCH type) family protein C.G. S.X.
0.75 1e-80 297 HS18J04u_at HS18J04u - - 6e-1 At1g01400 unknown protein C.G. S.X.
0.04 7e-2 36 HX12B17r_at HX12B17r - - 1e+0 At2g34310 unknown protein C.G. S.X.
0.04 3e-1 34 Contig16137_at Contig16137 - - 1e+0 At1g32440 PKp3 (plastidial pyruvate kinase 3) C.G. S.X.
0.03 3e-1 34 Contig16712_at Contig16712 - - 2e+0 At3g20080 CYP705A15 C.G. S.X.
0.03 1e+0 32 Contig2371_at Contig2371 - - 9e-36 At2g36620 RPL24A (ribosomal protein L24) C.G. S.X.
0.03 1e+0 32 Contig22691_at Contig22691 - - 2e+0 At3g25855 unknown protein C.G. S.X.
0.01 1e+0 32 Contig8277_at Contig8277 - - 2e-8 At3g01150 PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-3 42 Arabidopsis thaliana At3g12130 820388 KH domain-containing protein / zinc finger (CCCH type) family protein F:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;MPOFB - - - C.G. S.X.
0.05 8e-1 34 Glycine max Gma.3805.2.S1_at BI470538 - - 2e-1 At5g08220 unknown protein C.G. S.X.
0.10 3e-13 75 Oryza sativa Os04g0665700 AK121951.1 - KH, type 1 domain containing protein 7e-1 At3g56340 40S ribosomal protein S26 (RPS26C) C.G. S.X.
0.05 2e-1 36 Populus trichocarpa PtpAffx.158256.1.A1_at CV241861 hypothetical protein - 4e-1 At5g42530 unknown protein C.G. S.X.
0.58 5e-91 333 Triticum aestivum Ta.25905.1.A1_at CD454255 - - 2e-2 At5g27690 heavy-metal-associated domain-containing protein C.G. S.X.
0.03 1e+1 28 Vitis vinifera 1621113_at CF210338 hypothetical protein LOC100254691 - 4e+0 At2g22520 unknown protein C.G. S.X.
0.10 4e-6 50 Zea mays Zm.1787.1.S1_at AY103670.1 hypothetical protein LOC100192020 - 2e-4 At3g12130 KH domain-containing protein / zinc finger (CCCH type) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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