Gene omics information

Query gene ID	HD01O20w_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	HD01O20w_at	HD01O20w	-	-	5e+0	At4g22520	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.50	66.9	Contig20512_at	Contig20512	-	-	1e+0	At1g24430	transferase/ transferase, transferring acyl groups other than amino-acyl groups	S.X.	H.G.	Please select
0.09	7.4	HT12C11u_at	HT12C11u	-	-	1e+0	At2g01870	unknown protein	S.X.	H.G.	Please select
0.03	2.6	Contig13558_at	Contig13558	-	-	2e-1	At2g36270	ABI5 (ABA INSENSITIVE 5)	S.X.	H.G.	Please select
0.03	2.6	HVSMEl0005O07f_at	HVSMEl0005O07f	-	-	5e-1	At5g02560	HTA12	S.X.	H.G.	Please select
0.02	1.8	Contig17418_at	Contig17418	-	-	1e+0	At4g23610	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.8	99.5	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
14.4	99.5	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
13.7	99.5	GSM282024	Malting_day4_Merit_rep2	GSE11200	Expression data from malting barley seeds
13.4	99.4	GSM282020	Malting_day4_Legacy_rep 3	GSE11200	Expression data from malting barley seeds
13.0	99.4	GSM282023	Malting_day4_Merit_rep3	GSE11200	Expression data from malting barley seeds
11.8	99.3	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
11.0	99.2	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
8.7	98.9	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
8.3	98.8	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds
8.3	98.8	GSM282022	Malting_day4_Merit_rep4	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	36	HVSMEf0010J05r2_at	HVSMEf0010J05r2	-	-	5e+0	At3g17950	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Contig11738_at	Contig11738	-	-	5e-63	Atcg00780	-	C.G.	S.X.	Please select
0.03	6e-1	34	Contig5865_at	Contig5865	-	-	2e+1	At5g04267	unknown protein	C.G.	S.X.	Please select
0.04	3e+0	32	HW09B04u_at	HW09B04u	-	-	2e-1	At5g46360	KCO3 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3)	C.G.	S.X.	Please select
0.03	3e+0	32	Contig16547_at	Contig16547	-	-	1e+0	At1g35170	-	C.G.	S.X.	Please select
0.02	3e+0	32	Contig14787_at	Contig14787	-	-	3e-2	At2g14530	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig8654_at	Contig8654	-	-	3e-90	At5g18620	CHR17 (CHROMATIN REMODELING FACTOR17)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig8559_at	Contig8559	-	-	3e+0	At5g54100	band 7 family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Contig2147_at	Contig2147	-	-	4e+0	At5g59810	SBT5.4	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At4g22520	828347	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	Gma.9590.1.A1_at	BU548760	-	-	5e-3	At1g64000	WRKY56	C.G.	S.X.	Please select
0.03	1e+1	32	Oryza sativa	OsAffx.7498.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	Ptp.1341.2.A1_at	CK088238	-	-	8e-4	At1g51680	4CL1 (4-COUMARATE:COA LIGASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.24	4e-7	56	Triticum aestivum	TaAffx.6634.1.S1_at	CA681243	-	-	2e+1	At4g13261	unknown protein	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1622613_at	CF510899	-	-	2e-2	At4g02000	unknown protein	C.G.	S.X.	Please select
0.03	6e-1	34	Zea mays	ZmAffx.779.1.S1_at	AI746265	-	-	5e-33	Atcg00780	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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