Gene omics information

Query gene ID	HB25K17r_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.0	HB25K17r_at	HB25K17r	-	-	2e+0	At4g09260	unknown protein	S.X.	H.G.	Please select
0.71	87.1	Contig12570_at	Contig12570	-	-	5e-29	At3g53570	AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1)	S.X.	H.G.	Please select
0.61	78.7	S0001000055K01F1_at	S0001000055K01F1	-	-	3e+0	At2g24310	unknown protein	S.X.	H.G.	Please select
0.60	77.3	Contig1648_at	Contig1648	-	-	3e-18	At1g66200	ATGSR2	S.X.	H.G.	Please select
0.50	66.9	Contig18921_at	Contig18921	-	-	1e+0	At1g49520	SWIB complex BAF60b domain-containing protein	S.X.	H.G.	Please select
0.33	42.6	HVSMEn0017F07r2_at	HVSMEn0017F07r2	-	-	3e-7	At1g78560	bile acid:sodium symporter family protein	S.X.	H.G.	Please select
0.15	14.1	HB25J22r_x_at	HB25J22r	-	-	9e+0	At5g04790	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.5	99.9	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
24.4	99.8	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
17.0	99.6	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
13.3	99.4	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
13.1	99.4	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
13.1	99.4	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
10.2	99.1	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.7	99.0	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
9.7	99.0	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
9.7	99.0	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-2	36	Contig7029_at	Contig7029	-	-	3e-2	At1g08780	AIP3 (ABI3-INTERACTING PROTEIN 3)	C.G.	S.X.	Please select
0.04	2e-1	34	Contig5859_at	Contig5859	-	-	1e+0	At5g36910	THI2.2 (THIONIN 2.2)	C.G.	S.X.	Please select
0.01	9e-1	32	Contig4848_at	Contig4848	-	-	1e-10	At1g55860	UPL1 (UBIQUITIN-PROTEIN LIGASE 1)	C.G.	S.X.	Please select
0.02	4e+0	30	Contig9578_s_at	Contig9578	-	-	9e-13	At5g64030	dehydration-responsive protein-related	C.G.	S.X.	Please select
0.02	4e+0	30	Contig7744_at	Contig7744	-	-	1e-4	At1g29330	ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2)	C.G.	S.X.	Please select
0.03	4e+0	30	Contig5856_at	Contig5856	-	-	2e+0	At4g24420	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.03	4e+0	30	Contig9558_at	Contig9558	-	-	2e+0	At4g33770	inositol 1,3,4-trisphosphate 5/6-kinase family protein	C.G.	S.X.	Please select
0.02	4e+0	30	Contig2364_at	Contig2364	-	-	2e-25	At3g49010	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1)	C.G.	S.X.	Please select
0.02	4e+0	30	Contig10437_at	Contig10437	-	-	7e-1	At2g11773	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e+0	32	Arabidopsis thaliana	At4g09260	826509	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e+0	32	Glycine max	PsAffx.C150000036_at	PsAffx.C150000036	-	-	1e+0	At5g58110	ATPase activator/ chaperone binding	C.G.	S.X.	Please select
0.05	2e-1	36	Oryza sativa	OsAffx.14132.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	32	Populus trichocarpa	PtpAffx.205771.1.S1_at	pmrna11407	hypothetical protein	-	2e-2	At2g20430	RIC6 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 6)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.36	1e-44	178	Triticum aestivum	Ta.5070.1.A1_at	BJ238213	-	-	1e+0	At2g39855	unknown protein	C.G.	S.X.	Please select
0.06	6e-1	32	Vitis vinifera	1609889_at	CF403259	hypothetical protein LOC100260375	-	1e-1	At3g18640	zinc finger protein-related	C.G.	S.X.	Please select
0.05	2e-1	34	Zea mays	ZmAffx.573.1.A1_at	AI714739	hypothetical protein LOC100280041	-	1e+1	At5g11416	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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