Gene omics information

Query gene ID	HB25J22r_x_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.0	HB25J22r_x_at	HB25J22r	-	-	9e+0	At5g04790	unknown protein	S.X.	H.G.	Please select
0.61	78.7	HF22K12r_at	HF22K12r	-	-	5e+0	At5g23680	sterile alpha motif (SAM) domain-containing protein	S.X.	H.G.	Please select
0.43	56.4	Contig13375_at	Contig13375	-	-	3e-1	At5g55750	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.42	55.2	Contig7312_s_at	Contig7312	-	-	7e-2	At2g32650	-	S.X.	H.G.	Please select
0.32	40.3	HA08e10r_at	HA08e10r	-	-	2e-1	At1g23260	MMZ1 (MMS ZWEI HOMOLOGUE 1)	S.X.	H.G.	Please select
0.17	16.9	Contig21007_at	Contig21007	-	-	1e+0	At2g27520	F-box family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.4	99.9	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
29.3	99.9	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
25.9	99.8	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
23.0	99.8	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
22.5	99.8	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
22.5	99.8	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
21.2	99.7	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
18.9	99.7	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
18.9	99.7	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
17.6	99.6	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.57	5e-120	428	Contig231_x_at	Contig231	-	-	5e+0	At5g44570	unknown protein	C.G.	S.X.	Please select
0.77	1e-105	381	HA22G05r_x_at	HA22G05r	-	-	9e+0	At5g26692	-	C.G.	S.X.	Please select
0.77	1e-105	381	HA22G05r_at	HA22G05r	-	-	9e+0	At5g26692	-	C.G.	S.X.	Please select
0.69	3e-96	349	HB04N02r_x_at	HB04N02r	-	-	1e+1	At5g44570	unknown protein	C.G.	S.X.	Please select
0.53	3e-87	319	Contig216_at	Contig216	-	-	5e+0	At5g40040	60S acidic ribosomal protein P2 (RPP2E)	C.G.	S.X.	Please select
0.53	3e-87	319	Contig216_x_at	Contig216	-	-	5e+0	At5g40040	60S acidic ribosomal protein P2 (RPP2E)	C.G.	S.X.	Please select
0.79	7e-85	311	HB20B24r_s_at	HB20B24r	-	-	8e+0	At4g29340	PRF4 (PROFILIN 4)	C.G.	S.X.	Please select
0.38	1e-37	155	AJ249928_at	AJ249928	-	-	1e+1	At5g42300	UBL5 (UBIQUITIN-LIKE PROTEIN 5)	C.G.	S.X.	Please select
0.04	3e-1	34	Contig224_s_at	Contig224	-	-	5e+0	At5g62640	proline-rich family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	9e+0	30	Arabidopsis thaliana	At5g04790	830358	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e+0	32	Glycine max	GmaAffx.20156.1.S1_s_at	CA819645	Clone pSPG6a polygalacturonase precursor (PG6)	-	9e+0	At4g14740	phosphoinositide binding	C.G.	S.X.	Please select
0.04	1e+0	34	Oryza sativa	Os05g0166900	9633.m00658	-	-	1e+0	At5g54210	NLI interacting factor (NIF) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e+0	32	Populus trichocarpa	PtpAffx.5876.1.A1_at	CV230975	hypothetical protein	-	1e+0	At2g22122	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.29	3e-46	184	Triticum aestivum	Ta.115.1.S1_at	CD453742	puroindoline-b	-	6e+0	At5g64950	mitochondrial transcription termination factor-related / mTERF-related	C.G.	S.X.	Please select
0.05	6e-1	32	Vitis vinifera	1617483_at	CD799044	hypothetical protein LOC100267019	-	1e+0	At2g04170	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.04	4e+0	30	Zea mays	Zm.9080.1.A1_at	BM266417	-	-	2e-2	At3g55280	RPL23AB (RIBOSOMAL PROTEIN L23AB)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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