Gene omics information

Query gene ID	HB23F22r_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.95	99.2	HB23F22r_at	HB23F22r	-	-	3e+0	At3g58010	unknown protein	S.X.	H.G.	Please select
0.52	68.3	Contig13417_at	Contig13417	-	-	2e-4	At3g06970	RNA binding / nucleic acid binding / nucleotide binding	S.X.	H.G.	Please select
0.50	66.9	Contig3147_at	Contig3147	-	-	3e-4	At1g09940	HEMA2	S.X.	H.G.	Please select
0.48	63.2	Contig7800_at	Contig7800	-	-	2e-33	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	S.X.	H.G.	Please select
0.47	62.2	Contig26171_at	Contig26171	-	-	2e+0	At1g52580	ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)	S.X.	H.G.	Please select
0.47	62.2	Contig10718_at	Contig10718	-	-	2e-7	At1g78440	ATGA2OX1 (gibberellin 2-oxidase 1)	S.X.	H.G.	Please select
0.46	61.0	Contig10910_at	Contig10910	-	-	3e+0	At4g36430	peroxidase, putative	S.X.	H.G.	Please select
0.44	58.9	Contig23108_at	Contig23108	-	-	8e-1	At3g16280	DNA binding / transcription factor	S.X.	H.G.	Please select
0.44	58.9	Contig18000_at	Contig18000	knotted 1	-	1e-33	At1g62360	STM (SHOOT MERISTEMLESS)	S.X.	H.G.	Please select
0.43	56.4	HA28N02r_s_at	HA28N02r	-	-	1e-8	At2g23810	TET8 (TETRASPANIN8)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
41.3	99.9	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
41.3	99.9	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
35.8	99.9	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
35.8	99.9	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
27.6	99.8	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
26.4	99.8	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
25.5	99.8	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
20.9	99.7	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
20.9	99.7	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
19.4	99.7	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	32	Contig19611_at	Contig19611	-	-	4e-1	At5g11120	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Contig15576_at	Contig15576	-	-	5e+0	At5g14360	ubiquitin family protein	C.G.	S.X.	Please select
0.04	5e+0	30	Contig10136_s_at	Contig10136	-	-	7e-2	At5g01350	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	Contig10498_at	Contig10498	L-galactose dehydrogenase	-	4e-8	At4g33670	L-galactose dehydrogenase (L-GalDH)	C.G.	S.X.	Please select
0.02	5e+0	30	Contig9103_at	Contig9103	-	-	2e-1	At3g13410	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	30	Contig2656_at	Contig2656	-	-	7e-9	At4g24690	ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein	C.G.	S.X.	Please select
0.02	5e+0	30	Contig1393_at	Contig1393	-	-	1e-42	At3g46520	ACT12 (ACTIN-12)	C.G.	S.X.	Please select
0.03	2e+1	28	HVSMEc0003K22r2_at	HVSMEc0003K22r2	-	-	7e-5	At5g04250	OTU-like cysteine protease family protein	C.G.	S.X.	Please select
0.04	2e+1	28	baak33m21_at	baak33m21	-	-	3e+0	At2g47570	60S ribosomal protein L18 (RPL18A)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At3g58010	824970	unknown protein	F:unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast, plastoglobule;PFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e+0	32	Glycine max	GmaAffx.40706.1.S1_at	BG237889	-	-	2e+0	At5g41960	unknown protein	C.G.	S.X.	Please select
0.08	4e-19	95	Oryza sativa	Os03g0736000	AK099785.1	-	NOT2/NOT3/NOT5 family protein	5e-13	At5g59710	VIP2 (VIRE2 INTERACTING PROTEIN2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e+0	32	Populus trichocarpa	PtpAffx.216360.1.S1_at	pmrna31080	hypothetical protein	-	7e-2	At2g31840	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-9	61	Triticum aestivum	Ta.6738.1.S1_at	BJ217244	-	-	2e-8	At5g59710	VIP2 (VIRE2 INTERACTING PROTEIN2)	C.G.	S.X.	Please select
0.04	7e-1	32	Vitis vinifera	1616392_at	CF372646	-	-	2e-1	At5g09800	U-box domain-containing protein	C.G.	S.X.	Please select
0.11	3e-16	83	Zea mays	Zm.3513.1.A1_at	CA404391	-	-	6e-5	At1g07705	transcription regulator	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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