Gene omics information

Query gene ID	HB08N07r_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	HB08N07r_at	HB08N07r	-	-	2e-1	At3g04590	DNA-binding family protein	S.X.	H.G.	Please select
0.63	80.3	Contig10338_at	Contig10338	-	-	4e-2	At5g54900	ATRBP45A (RNA-binding protein 45A)	S.X.	H.G.	Please select
0.55	72.0	Contig8153_at	Contig8153	-	-	5e-42	At3g09550	protein binding	S.X.	H.G.	Please select
0.53	69.7	Contig20549_at	Contig20549	-	-	2e-27	At2g39480	PGP6 (P-GLYCOPROTEIN 6)	S.X.	H.G.	Please select
0.53	69.7	Contig15303_at	Contig15303	-	-	6e-1	At3g10860	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	S.X.	H.G.	Please select
0.52	68.3	Contig11498_at	Contig11498	-	-	2e+0	At5g07225	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.39	50.5	Contig13468_at	Contig13468	-	-	2e+0	At2g33850	unknown protein	S.X.	H.G.	Please select
0.33	42.6	Contig13319_at	Contig13319	-	-	3e+0	At3g23172	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.1	98.4	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.5	98.2	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.0	97.2	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6	96.8	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4	96.6	GSM261062	Xantha s-46 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4	96.6	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.2	96.3	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.0	96.0	GSM261063	Xantha s-46 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9	95.8	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-4	44	Contig17924_at	Contig17924	-	-	2e+0	At5g55570	unknown protein	C.G.	S.X.	Please select
0.02	5e-4	44	Contig9787_at	Contig9787	-	-	4e+0	At2g27505	-	C.G.	S.X.	Please select
0.01	7e-3	40	Contig3713_s_at	Contig3713	-	-	3e-10	At4g33510	DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase)	C.G.	S.X.	Please select
0.03	3e-2	38	Contig20981_at	Contig20981	-	-	1e+0	At5g04600	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.02	3e-2	38	Contig15964_at	Contig15964	-	-	1e-5	At4g33020	ZIP9	C.G.	S.X.	Please select
0.03	3e-2	38	Contig12289_at	Contig12289	-	-	4e-1	At1g63105	unknown protein	C.G.	S.X.	Please select
0.02	3e-2	38	Contig17743_at	Contig17743	-	-	2e-1	At1g02710	glycine-rich protein	C.G.	S.X.	Please select
0.03	3e-2	38	Contig13932_at	Contig13932	-	-	3e-1	At3g29170	unknown protein	C.G.	S.X.	Please select
0.03	3e-2	38	Contig11340_at	Contig11340	-	-	1e-4	At4g00940	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	36	Arabidopsis thaliana	At3g04590	819615	DNA-binding family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MOPFBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	8e-2	38	Glycine max	PsAffx.CL1438Contig1_at	PsAffx.CL1438Contig1	-	-	4e-2	At5g62090	-	C.G.	S.X.	Please select
0.05	3e-2	40	Oryza sativa	Os09g0469600	AK058776.1	-	Hypothetical protein	2e+0	At2g17300	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e-1	36	Populus trichocarpa	PtpAffx.133715.1.A1_at	CV265575	GRAS family transcription factor	-	2e-4	At3g54220	SCR (SCARECROW)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.26	3e-22	105	Triticum aestivum	Ta.7527.1.S1_at	BJ320276	-	-	3e+0	At5g11900	eukaryotic translation initiation factor SUI1 family protein	C.G.	S.X.	Please select
0.03	3e-1	34	Vitis vinifera	1611792_at	CF609858	hypothetical protein LOC100262185	-	2e-2	At3g47510	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Zea mays	Zm.13244.1.S1_at	AF453838.1	satase isoform II	-	4e-2	At5g23680	sterile alpha motif (SAM) domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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