Gene omics information

Query gene ID	HA06i14r_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	72.0	HA06i14r_s_at	HA06i14r	-	-	8e-4	At5g15650	RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)	S.X.	H.G.	Please select
0.73	88.7	Contig16423_at	Contig16423	-	-	2e+0	At3g02580	STE1 (STEROL 1)	S.X.	H.G.	Please select
0.71	87.1	Contig3332_at	Contig3332	-	-	2e-1	At3g21215	RNA-binding protein, putative	S.X.	H.G.	Please select
0.67	84.7	Contig6860_at	Contig6860	-	-	8e-4	At5g66815	unknown protein	S.X.	H.G.	Please select
0.59	75.8	rbaak4i15_s_at	rbaak4i15	-	-	2e-6	At5g08680	ATP synthase beta chain, mitochondrial, putative	S.X.	H.G.	Please select
0.48	63.2	Contig416_x_at	Contig416	-	-	5e-29	At4g24190	SHD (SHEPHERD)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.0	97.2	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
4.3	96.4	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.2	96.3	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1	96.2	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1	96.2	GSM146378	Maythorpe shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1	96.2	GSM146372	Golden Promise shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.9	95.8	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.38	0	674	Contig1642_at	Contig1642	-	-	3e-108	At5g15650	RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)	C.G.	S.X.	Please select
0.08	2e-18	91	Contig1634_at	Contig1634	-	-	3e-71	At3g02230	RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1)	C.G.	S.X.	Please select
0.06	2e-18	91	Contig1633_at	Contig1633	-	-	2e-99	At5g15650	RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)	C.G.	S.X.	Please select
0.05	4e-1	34	Contig4489_s_at	Contig4489	-	-	3e+0	At2g29525	-	C.G.	S.X.	Please select
0.03	4e-1	34	Contig18767_at	Contig18767	-	-	2e+0	At4g12030	bile acid:sodium symporter family protein	C.G.	S.X.	Please select
0.03	4e-1	34	Contig4486_at	Contig4486	-	-	4e-1	At5g16470	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.03	4e-1	34	Contig10029_at	Contig10029	-	-	2e+0	At5g17165	unknown protein	C.G.	S.X.	Please select
0.02	4e-1	34	Contig10910_at	Contig10910	-	-	3e+0	At4g36430	peroxidase, putative	C.G.	S.X.	Please select
0.02	1e+0	32	Contig6408_at	Contig6408	-	-	6e-1	At1g21900	emp24/gp25L/p24 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	8e-4	44	Arabidopsis thaliana	At5g15650	831419	RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)	Reversibly Glycosylated Polypeptide-2	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	3e-1	36	Glycine max	Gma.2464.3.S1_s_at	BQ740648	-	-	3e-16	At5g15650	RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)	C.G.	S.X.	Please select
0.22	8e-30	131	Oryza sativa	Os03g0599800	AF294725.1	-	Alpha-1,4-glucan-protein synthase [UDP-forming] 1(EC 2.4.1.112) (UDP- glucose:protein transglucosylase 1)(UPTG 1)	1e-135	At5g15650	RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	2e-5	50	Populus trichocarpa	PtpAffx.121079.1.A1_at	CV255179	hypothetical protein	-	4e-22	At5g15650	RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.61	8e-41	167	Triticum aestivum	TaAffx.109919.1.S1_at	CA666813	-	-	2e+1	At5g22390	unknown protein	C.G.	S.X.	Please select
0.14	4e-9	59	Vitis vinifera	1616561_at	CB982529	hypothetical protein LOC100256140	-	1e-28	At3g08900	RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3)	C.G.	S.X.	Please select
0.15	4e-19	93	Zea mays	Zm.752.2.A1_at	CD446884	hypothetical protein LOC100274298	-	9e-49	At5g15650	RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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