Gene omics information

Query gene ID	HA05g22r_x_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.94	98.9	HA05g22r_x_at	HA05g22r	-	-	4e-2	At1g47960	C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1)	S.X.	H.G.	Please select
0.48	63.2	Contig2012_s_at	Contig2012	-	-	2e-21	At3g46230	ATHSP17.4	S.X.	H.G.	Please select
0.36	47.1	HV13D09r_at	HV13D09r	-	-	4e+0	At5g36960	unknown protein	S.X.	H.G.	Please select
0.32	40.3	rbags18m16_at	rbags18m16	-	-	2e+0	At2g35790	unknown protein	S.X.	H.G.	Please select
0.27	32.1	HW03I20u_x_at	HW03I20u	-	-	3e+0	At4g03540	integral membrane family protein	S.X.	H.G.	Please select
0.27	32.1	EBma08_SQ003_L03_at	EBma08_SQ003_L03	-	-	6e-2	At2g40060	protein binding / structural molecule	S.X.	H.G.	Please select
0.25	28.9	Contig25828_at	Contig25828	-	-	2e+0	At1g80420	DNA repair protein, putative (XRCC1)	S.X.	H.G.	Please select
0.23	26.1	AF016328_at	AF016328	-	-	7e-2	At1g75050	-	S.X.	H.G.	Please select
0.20	21.1	HVSMEh0084N15r2_s_at	HVSMEh0084N15r2	-	-	6e+0	At1g48510	cytochrome c oxidase assembly protein surfeit-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.7	99.9	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
13.5	99.5	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
13.1	99.4	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
12.1	99.3	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.3	98.1	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.6	97.7	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2	97.4	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4	96.6	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
4.0	96.0	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
3.8	95.7	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	3e-149	525	Contig3597_at	Contig3597	-	-	1e-1	At1g47960	C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1)	C.G.	S.X.	Please select
0.68	2e-89	327	HA28D17r_s_at	HA28D17r	-	-	6e-2	At1g47960	C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1)	C.G.	S.X.	Please select
0.04	2e-2	38	Contig14340_at	Contig14340	-	-	5e+0	At4g06634	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.03	2e-2	38	Contig1778_s_at	Contig1778	-	-	2e+0	At3g15020	malate dehydrogenase (NAD), mitochondrial, putative	C.G.	S.X.	Please select
0.02	9e-2	36	Contig7701_at	Contig7701	-	-	6e-15	At3g07050	GTP-binding family protein	C.G.	S.X.	Please select
0.04	3e-1	34	Contig3622_at	Contig3622	-	-	2e-2	At3g46900	COPT2	C.G.	S.X.	Please select
0.02	3e-1	34	Contig8024_at	Contig8024	-	-	3e+0	At5g23510	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	34	Contig10676_at	Contig10676	-	-	3e-8	At2g20270	glutaredoxin family protein	C.G.	S.X.	Please select
0.04	3e-1	34	Contig943_s_at	Contig943	-	-	1e-1	At1g68945	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	4e-2	38	Arabidopsis thaliana	At1g47960	841214	C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1)	Plant cell wall (CWI) and vacuolar invertases (VI) play important roles in carbohydrate metabolism, stress responses and sugar signaling.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	PsAffx.CL1759Contig1_at	PsAffx.CL1759Contig1	-	-	4e+0	At3g57062	unknown protein	C.G.	S.X.	Please select
0.05	2e-2	40	Oryza sativa	OsAffx.13917.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	2e-1	36	Populus trichocarpa	PtpAffx.211943.1.S1_x_at	pmrna23451	hypothetical protein	-	1e-12	At3g45850	kinesin motor protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.55	7e-72	270	Triticum aestivum	Ta.26913.1.S1_at	BJ242167	-	-	2e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	C.G.	S.X.	Please select
0.04	8e-1	32	Vitis vinifera	1611371_at	CF215802	-	-	4e+0	At5g64360	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.05	3e-1	34	Zea mays	Zm.3832.1.S1_at	AY112267.1	actin-depolymerizing factor	-	1e-13	At4g25590	ADF7 (actin depolymerizing factor 7)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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