Gene omics information

Query gene ID	HA04j23r_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.40	53.1	HA04j23r_at	HA04j23r	-	-	1e+1	At5g58990	unknown protein	S.X.	H.G.	Please select
0.55	72.0	EBem04_SQ002_D16_at	EBem04_SQ002_D16	-	-	9e-1	At4g29470	phospholipase A2, putative	S.X.	H.G.	Please select
0.44	58.9	EBro03_SQ007_C24_at	EBro03_SQ007_C24	-	-	1e+0	At4g15885	kinesin motor protein-related	S.X.	H.G.	Please select
0.20	21.1	EBan01_SQ003_M14_at	EBan01_SQ003_M14	-	-	9e+0	At4g16980	arabinogalactan-protein family	S.X.	H.G.	Please select
0.16	15.3	HVSMEn0004H06r2_at	HVSMEn0004H06r2	-	-	4e-16	At2g18390	TTN5 (TITAN 5)	S.X.	H.G.	Please select
0.01	1.1	Contig24522_at	Contig24522	-	-	5e-4	At5g06740	lectin protein kinase family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
36.4	99.9	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
31.7	99.9	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
30.9	99.9	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
20.2	99.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
12.0	99.3	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.7	98.9	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.0	98.7	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.3	98.5	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
5.6	97.7	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.75	6e-92	335	Contig23472_at	Contig23472	-	-	1e+1	At5g45010	ATDSS1(V) (Arabidopsis dss1 homolog on chromosome V)	C.G.	S.X.	Please select
0.07	5e-3	40	Contig4919_at	Contig4919	-	-	6e+0	At5g06080	LBD33 (LOB DOMAIN-CONTAINING PROTEIN 33)	C.G.	S.X.	Please select
0.01	8e-2	36	AB024007_at	AB024007	-	-	6e-1	At1g33800	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	HV12P19u_at	HV12P19u	-	-	2e-2	At1g72600	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Contig3152_at	Contig3152	-	-	2e-5	At5g39110	germin-like protein, putative	C.G.	S.X.	Please select
0.02	1e+0	32	Contig22332_at	Contig22332	-	-	1e-4	At3g60910	catalytic/ methyltransferase	C.G.	S.X.	Please select
0.04	1e+0	32	Contig3157_at	Contig3157	-	-	1e-2	At5g38950	germin-like protein-related	C.G.	S.X.	Please select
0.02	5e+0	30	Contig6544_at	Contig6544	-	-	1e-76	At1g21690	emb1968 (embryo defective 1968)	C.G.	S.X.	Please select
0.03	5e+0	30	Contig21415_at	Contig21415	-	-	5e+0	At3g61980	serine protease inhibitor, Kazal-type family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+1	30	Arabidopsis thaliana	At5g58990	836016	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	HgAffx.14195.1.S1_at	CB374176	-	-	4e+0	At1g50110	branched-chain amino acid aminotransferase 6 / branched-chain amino acid transaminase 6 (BCAT6)	C.G.	S.X.	Please select
0.18	2e-5	50	Oryza sativa	OsAffx.30930.2.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+1	30	Populus trichocarpa	PtpAffx.218637.1.S1_s_at	pmrna34331	hypothetical protein	-	3e-1	At2g34185	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.41	3e-31	135	Triticum aestivum	Ta.23474.3.S1_x_at	AJ611911	-	-	7e-1	At1g02210	regulator of shoot apical meristem-related	C.G.	S.X.	Please select
0.05	3e+0	30	Vitis vinifera	1608963_at	CD802254	-	-	5e-1	At3g21190	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Zea mays	Zm.9554.1.A1_at	BM267111	hypothetical protein LOC100280419	-	5e+0	At3g53850	-	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage