Gene omics information

Query gene ID	HA03O05u_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	HA03O05u_s_at	HA03O05u	-	-	1e+1	At2g18670	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.30	37.0	Contig2783_s_at	Contig2783	-	-	5e+0	At5g01870	lipid transfer protein, putative	S.X.	H.G.	Please select
0.29	35.5	Contig2951_at	Contig2951	-	-	2e+0	At4g30270	MERI5B (meristem-5)	S.X.	H.G.	Please select
0.29	35.5	HF17H18r_s_at	HF17H18r	-	-	3e+0	At4g03410	peroxisomal membrane protein-related	S.X.	H.G.	Please select
0.28	35.5	Contig14901_at	Contig14901	-	-	1e+0	At1g24060	unknown protein	S.X.	H.G.	Please select
0.27	32.1	Contig21140_at	Contig21140	-	-	1e-7	At4g27300	S-locus protein kinase, putative	S.X.	H.G.	Please select
0.25	28.9	Contig4260_at	Contig4260	-	-	5e-2	At4g37980	ELI3-1 (ELICITOR-ACTIVATED GENE 3-1)	S.X.	H.G.	Please select
0.22	24.2	EBem09_SQ001_L06_s_at	EBem09_SQ001_L06	-	-	5e-1	At5g16470	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.17	16.9	HVSMEb0009P09r2_at	HVSMEb0009P09r2	-	-	4e+0	At1g55900	TIM50	S.X.	H.G.	Please select
0.16	15.3	Contig9095_at	Contig9095	-	-	2e+0	At1g29380	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.0	98.7	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
8.0	98.7	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.5	98.2	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.5	98.2	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
6.4	98.1	GSM419974	Lemma_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.4	98.1	GSM440959	Control lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
6.3	98.1	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.3	98.1	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.9	97.1	GSM419979	Awn_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.9	97.1	GSM440970	Control awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	1e-53	206	Contig6145_at	Contig6145	-	-	1e-3	At2g24940	AtMAPR2 (Arabidopsis thaliana membrane-associated progesterone binding protein 2)	C.G.	S.X.	Please select
0.01	2e+0	30	Contig9348_at	Contig9348	-	-	2e-5	At1g02080	transcriptional regulator-related	C.G.	S.X.	Please select
0.04	2e+0	30	Contig119_at	Contig119	-	-	1e-6	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.04	2e+0	30	Contig350_x_at	Contig350	-	-	6e-9	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.01	7e+0	28	Contig6264_at	Contig6264	-	-	2e-5	At3g11330	leucine-rich repeat family protein	C.G.	S.X.	Please select
0.02	7e+0	28	Contig4566_at	Contig4566	-	-	3e+0	At4g32870	unknown protein	C.G.	S.X.	Please select
0.01	7e+0	28	Contig1797_x_at	Contig1797	-	-	1e-19	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select
0.03	7e+0	28	Contig18028_at	Contig18028	-	-	6e+0	At5g40981	unknown protein	C.G.	S.X.	Please select
0.02	7e+0	28	Contig12702_at	Contig12702	-	-	3e-8	At4g14940	ATAO1 (ARABIDOPSIS THALIANA AMINE OXIDASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+1	28	Arabidopsis thaliana	At2g18670	816382	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	5e+0	30	Glycine max	GmaAffx.91289.1.S1_at	CF807014	-	-	3e+0	At3g42830	ring-box protein Roc1/Rbx1/Hrt1, putative	C.G.	S.X.	Please select
0.03	2e+0	32	Oryza sativa	Os08g0439600	CA761215	-	Plant protein of unknown function DUF868 familyprotein	2e+0	At2g23755	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e+1	28	Populus trichocarpa	PtpAffx.62428.1.A1_at	CV281289	-	-	8e-1	At4g19850	ATPP2-A2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	6e-2	36	Triticum aestivum	TaAffx.43429.1.A1_at	BQ168807	-	-	4e-2	At1g32250	calmodulin, putative	C.G.	S.X.	Please select
0.04	2e+1	26	Vitis vinifera	1617537_at	CF214567	hypothetical protein LOC100267729	-	7e-2	At1g53460	unknown protein	C.G.	S.X.	Please select
0.05	2e+1	26	Zea mays	ZmAffx.706.1.A1_at	AI738209	-	-	8e-1	At1g23590	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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