CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.93592.1.S1_x_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 71.7 GmaAffx.93592.1.S1_x_at CF809317 - - 3e-12 At5g19855 unknown protein S.X. H.G.
0.67 86.1 Gma.3420.1.S1_at CD406082 - - 5e-17 At5g19855 unknown protein S.X. H.G.
0.61 81.8 GmaAffx.93592.1.S1_s_at CF809317 - - 3e-12 At5g19855 unknown protein S.X. H.G.
0.50 71.7 Gma.17408.1.S1_at BE057084 - - 8e-3 At3g10420 sporulation protein-related S.X. H.G.
0.31 42.2 GmaAffx.93297.1.S1_s_at CF809022 - - 4e-19 At1g10500 ATCPISCA (chloroplast-localized IscA-like protein) S.X. H.G.
0.21 26.6 Gma.16651.2.S1_at BI941696 - - 7e-5 At1g50020 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
64.9 100.0 GSM209599 susceptible_48hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
64.4 99.9 GSM209580 resistant_48hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
52.0 99.9 GSM209597 susceptible_24hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
36.9 99.9 GSM209596 resistant_24hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
35.2 99.9 GSM209589 resistant_48hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
35.1 99.9 GSM209598 resistant_48hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
34.0 99.9 GSM238057 Soybean-S03W4-1-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
31.9 99.9 GSM238030 Soybean-2601R-2-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
31.3 99.9 GSM209581 susceptible_48hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
29.4 99.8 GSM170928 V2 Control, biological rep3 GSE7108 Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 753 GmaAffx.93592.1.S1_s_at CF809317 - - 3e-12 At5g19855 unknown protein C.G. S.X.
0.46 0 638 Gma.3420.1.S1_at CD406082 - - 5e-17 At5g19855 unknown protein C.G. S.X.
0.29 5e-49 194 GmaAffx.20432.1.S1_at CD414185 - - 2e-26 At5g19855 unknown protein C.G. S.X.
0.02 7e-2 38 PsAffx.C65000075_at PsAffx.C65000075 - - 3e+0 At5g10110 unknown protein C.G. S.X.
0.02 3e-1 36 PsAffx.C40000058_at PsAffx.C40000058 - - 5e-2 At3g11160 unknown protein C.G. S.X.
0.02 3e-1 36 Gma.3774.1.S1_at BU550698 - - 3e+0 At5g54460 wound-responsive protein-related C.G. S.X.
0.04 1e+0 34 HgAffx.2230.1.A1_at CK350620 - - 3e+0 At1g33820 unknown protein C.G. S.X.
0.04 1e+0 34 HgAffx.2230.1.S1_at CK350620 - - 3e+0 At1g33820 unknown protein C.G. S.X.
0.02 1e+0 34 HgAffx.19642.1.S1_at CB380038 - - 1e-2 At5g38480 GRF3 (GENERAL REGULATORY FACTOR 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 3e-12 71 Arabidopsis thaliana At5g19855 832106 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO - - - C.G. S.X.
0.08 1e+0 32 Hordeum vulgare Contig5176_at Contig5176 - - 5e+0 At2g18240 RER1 protein, putative C.G. S.X.
0.09 9e-5 48 Oryza sativa Os03g0807900 AK060962.1 - Conserved hypothetical protein 2e-16 At5g19855 unknown protein C.G. S.X.
0.25 3e-25 115 Populus trichocarpa PtpAffx.39050.2.S1_at CK090154 hypothetical protein - 4e-25 At5g19855 unknown protein C.G. S.X.
0.04 3e+0 32 Triticum aestivum TaAffx.108427.1.S1_at CA688468 - - 4e+0 At1g05920 DNA binding C.G. S.X.
0.24 7e-20 95 Vitis vinifera 1610033_s_at CA816852 hypothetical protein LOC100246804 - 4e-28 At5g19855 unknown protein C.G. S.X.
0.04 5e+0 30 Zea mays Zm.19144.1.A1_at CO518283 hypothetical protein LOC100217274 - 1e+0 At5g58860 CYP86A1 (CYTOCHROME P450 86 A1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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