Gene omics information

Query gene ID	GmaAffx.93561.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.93561.1.S1_at	CF807977	-	-	3e-6	At1g10070	ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)	S.X.	H.G.	Please select
0.67	86.1	Gma.3429.1.S1_at	BI974673	-	-	1e-12	At1g21400	2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative	S.X.	H.G.	Please select
0.59	79.5	Gma.3405.1.S1_s_at	AW350922	-	-	3e-6	At1g10070	ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)	S.X.	H.G.	Please select
0.44	63.3	Gma.16423.1.S1_at	BG507821	-	-	2e-93	At3g45300	IVD (ISOVALERYL-COA-DEHYDROGENASE)	S.X.	H.G.	Please select
0.38	53.3	GmaAffx.23763.1.S1_at	BU579160	-	-	8e-47	At5g65110	ACX2 (ACYL-COA OXIDASE 2)	S.X.	H.G.	Please select
0.38	53.3	Gma.15311.1.S1_at	BE821873	-	-	2e-3	At3g06850	BCE2	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.9	99.7	GSM293197	79_C053.1O.R9O3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.8	99.4	GSM293113	28_C047.1O.R9O2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.3	99.3	GSM292164	19_C009.1A.R9A2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.6	99.2	GSM244920	5_VP9.I5L2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
9.6	99.2	GSM293114	29_1139.1O.R087L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.3	99.2	GSM292730	75_C165.1J.R9J1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.1	99.0	GSM293262	48_1537.1P.R044L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.8	99.0	GSM292845	24_1445.1L.R272L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.7	99.0	GSM244909	3_VP9.I3L2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
7.5	98.9	GSM292274	19_C089.1E.R9E3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.84	0	1895	Gma.3405.1.S1_s_at	AW350922	-	-	3e-6	At1g10070	ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)	C.G.	S.X.	Please select
0.46	0	670	Gma.3405.2.S1_s_at	BG882930	-	-	1e+0	At1g10060	branched-chain amino acid aminotransferase 1 / branched-chain amino acid transaminase 1 (BCAT1)	C.G.	S.X.	Please select
0.36	2e-175	617	GmaAffx.37477.1.S1_s_at	BQ081355	-	-	8e-1	At1g10070	ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)	C.G.	S.X.	Please select
0.04	7e-2	40	GmaAffx.92033.1.S1_at	CF807745	-	-	3e-7	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	C.G.	S.X.	Please select
0.04	7e-2	40	GmaAffx.92033.1.S1_x_at	CF807745	-	-	3e-7	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	C.G.	S.X.	Please select
0.01	3e-1	38	Gma.6130.1.S1_at	CD409089	-	-	2e-21	At1g05570	CALS1 (CALLOSE SYNTHASE 1)	C.G.	S.X.	Please select
0.02	3e-1	38	Gma.3113.1.S1_at	BM732508	-	-	2e-12	At1g56423	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	36	PsAffx.CL58Contig1_s_at	PsAffx.CL58Contig1	-	-	6e+0	At5g47930	40S ribosomal protein S27 (RPS27D)	C.G.	S.X.	Please select
0.02	1e+0	36	PsAffx.CL650Contig1_at	PsAffx.CL650Contig1	-	-	1e+0	At2g21780	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	3e-6	54	Arabidopsis thaliana	At1g10070	837543	ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)	Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-6	54	Hordeum vulgare	Contig8040_at	Contig8040	-	-	6e-11	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	C.G.	S.X.	Please select
0.04	6e-6	54	Oryza sativa	Os05g0558400	AK072756.1	-	Branched-chain-amino-acid aminotransferase 3,chloroplast precursor (EC 2.6.1.42) (Atbcat-3)	5e-24	At5g65780	ATBCAT-5	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	1e-15	85	Populus trichocarpa	PtpAffx.94207.1.S1_at	BU811592	hypothetical protein	-	5e-11	At1g10070	ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	8e-1	36	Triticum aestivum	TaAffx.80905.1.S1_at	CA691314	-	-	3e+0	At3g62030	peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4)	C.G.	S.X.	Please select
0.07	4e-6	52	Vitis vinifera	1622060_at	BM436271	-	-	3e-32	At5g65780	ATBCAT-5	C.G.	S.X.	Please select
0.06	1e-6	54	Zea mays	Zm.2520.1.A1_at	AW400289	hypothetical protein LOC100191754	-	5e-21	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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