Gene omics information

Query gene ID GmaAffx.93494.1.A1_s_at
Gene name chalcone isomerase 4-like
Organism Glycine max


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5979.5GmaAffx.93494.1.A1_s_atCF809219chalcone isomerase 4-like-3e-4At5g05270chalcone-flavanone isomerase family proteinS.X.H.G.
0.6382.9Gma.13342.1.A1_atAW349994--2e-1At4g13660PRR2 (PINORESINOL REDUCTASE 2)S.X.H.G.
0.5979.5Gma.15492.1.S1_s_atAF276302.1chalcone isomerase-2e+0At1g52510hydrolase, alpha/beta fold family proteinS.X.H.G.
0.5778.8Gma.4300.1.S1_s_atS46989.1chalcone synthase-5e-29At5g13930TT4 (TRANSPARENT TESTA 4)S.X.H.G.
0.5374.2Gma.1689.1.S1_s_atAB007907.16-phosphogluconate dehydrogenase-1e-114At3g023606-phosphogluconate dehydrogenase family proteinS.X.H.G.
0.5374.2Gma.6602.2.S1_s_atBI320883--4e-103At5g16440IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)S.X.H.G.
0.4259.3GmaAffx.37677.1.S1_s_atBE022626HIDH mRNA for 2-hydroxyisoflavanone dehydratase-3e-1At2g30050transducin family protein / WD-40 repeat family proteinS.X.H.G.
0.4057.1GmaAffx.92278.1.S1_s_atCF8080036-phosphogluconate dehydrogenase-4e-74At3g023606-phosphogluconate dehydrogenase family proteinS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
12.199.5GSM201124Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stage
8.899.1GSM201125Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stage
7.498.9GSM201109Laser capture microdissected (LCM) cotyledon abaxial epidermis at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stage
7.398.9GSM1716993_W.I.I.3, Experimental replicate WGSE7124Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.998.8GSM17163218_W.E.I.3, Experimental replicate WGSE7124Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.698.7GSM17166626_V.E.I.3, Experimental replicate VGSE7124Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.698.7GSM24479113_SLO.I2W1.CEL, Experimental replicate 1GSE9687Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
6.598.7GSM201113Laser capture microdissected (LCM) cotyledon adaxial epidermis at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stage
6.598.7GSM1717147_V.I.I.3, Experimental replicate VGSE7124Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.498.6GSM17168630_V.F.I.3, Experimental replicate VGSE7124Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
1.0001189GmaAffx.93494.1.S1_atCF809219Putative chalcone isomerase 4-3e-4At5g05270chalcone-flavanone isomerase family proteinC.G.S.X.
0.051e-448HgAffx.17121.1.S1_atCB379546--7e-2At5g27541C.G.S.X.
0.017e-342PsAffx.C243000003_atPsAffx.C243000003--2e-2At1g34790TT1 (transparent testa 1)C.G.S.X.
0.047e-342HgAffx.6386.1.S1_atCB825825--6e-2At2g22080unknown proteinC.G.S.X.
0.023e-240PsAffx.C61000065_atPsAffx.C61000065--5e-2At5g62500ATEB1B (END BINDING PROTEIN 1B)C.G.S.X.
0.011e-138PsAffx.C7000010_atPsAffx.C7000010--2e-2At1g63650EGL3 (ENHANCER OF GLABRA 3)C.G.S.X.
0.021e-138PsAffx.C52000026_atPsAffx.C52000026--4e+0At5g55750hydroxyproline-rich glycoprotein family proteinC.G.S.X.
0.011e-138PsAffx.C336000003_atPsAffx.C336000003--2e-1At5g22310unknown proteinC.G.S.X.
0.011e-138PsAffx.C210000006_atPsAffx.C210000006--1e-2At5g41630F-box family proteinC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.063e-446Arabidopsis thalianaAt5g05270830409chalcone-flavanone isomerase family proteinF:chalcone isomerase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;P---C.G.S.X.
0.044e-238Hordeum vulgareContig24413_atContig24413--1e+1At5g23411unknown proteinC.G.S.X.
0.114e-240Oryza sativaOs.37295.1.S1_at---0C.G.S.X.
0.092e-344Populus trichocarpaPtpAffx.932.2.A1_atCV268183chalcone isomerase-like protein-7e-3At5g05270chalcone-flavanone isomerase family proteinC.G.S.X.
0.042e-240Triticum aestivumTaAffx.71193.1.A1_atBE492362--5e-5At2g33510protein bindingC.G.S.X.
0.283e-23107Vitis vinifera1620424_atCB349003hypothetical protein LOC100255217-2e-3At5g05270chalcone-flavanone isomerase family proteinC.G.S.X.
0.042e-342Zea maysZm.4213.1.A1_atBG841480IDP158 protein /// chalcone--flavonone isomerase /// chalcone--flavonone isomerase-1e-5At5g05270chalcone-flavanone isomerase family proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage