Gene omics information

Query gene ID	GmaAffx.93494.1.A1_s_at
Gene name	chalcone isomerase 4-like
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	79.5	GmaAffx.93494.1.A1_s_at	CF809219	chalcone isomerase 4-like	-	3e-4	At5g05270	chalcone-flavanone isomerase family protein	S.X.	H.G.	Please select
0.63	82.9	Gma.13342.1.A1_at	AW349994	-	-	2e-1	At4g13660	PRR2 (PINORESINOL REDUCTASE 2)	S.X.	H.G.	Please select
0.59	79.5	Gma.15492.1.S1_s_at	AF276302.1	chalcone isomerase	-	2e+0	At1g52510	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please select
0.57	78.8	Gma.4300.1.S1_s_at	S46989.1	chalcone synthase	-	5e-29	At5g13930	TT4 (TRANSPARENT TESTA 4)	S.X.	H.G.	Please select
0.53	74.2	Gma.1689.1.S1_s_at	AB007907.1	6-phosphogluconate dehydrogenase	-	1e-114	At3g02360	6-phosphogluconate dehydrogenase family protein	S.X.	H.G.	Please select
0.53	74.2	Gma.6602.2.S1_s_at	BI320883	-	-	4e-103	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	S.X.	H.G.	Please select
0.42	59.3	GmaAffx.37677.1.S1_s_at	BE022626	HIDH mRNA for 2-hydroxyisoflavanone dehydratase	-	3e-1	At2g30050	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.92278.1.S1_s_at	CF808003	6-phosphogluconate dehydrogenase	-	4e-74	At3g02360	6-phosphogluconate dehydrogenase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.1	99.5	GSM201124	Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
8.8	99.1	GSM201125	Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
7.4	98.9	GSM201109	Laser capture microdissected (LCM) cotyledon abaxial epidermis at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
7.3	98.9	GSM171699	3_W.I.I.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.9	98.8	GSM171632	18_W.E.I.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.6	98.7	GSM171666	26_V.E.I.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.6	98.7	GSM244791	13_SLO.I2W1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
6.5	98.7	GSM201113	Laser capture microdissected (LCM) cotyledon adaxial epidermis at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.5	98.7	GSM171714	7_V.I.I.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.4	98.6	GSM171686	30_V.F.I.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1189	GmaAffx.93494.1.S1_at	CF809219	Putative chalcone isomerase 4	-	3e-4	At5g05270	chalcone-flavanone isomerase family protein	C.G.	S.X.	Please select
0.05	1e-4	48	HgAffx.17121.1.S1_at	CB379546	-	-	7e-2	At5g27541		C.G.	S.X.	Please select
0.01	7e-3	42	PsAffx.C243000003_at	PsAffx.C243000003	-	-	2e-2	At1g34790	TT1 (transparent testa 1)	C.G.	S.X.	Please select
0.04	7e-3	42	HgAffx.6386.1.S1_at	CB825825	-	-	6e-2	At2g22080	unknown protein	C.G.	S.X.	Please select
0.02	3e-2	40	PsAffx.C61000065_at	PsAffx.C61000065	-	-	5e-2	At5g62500	ATEB1B (END BINDING PROTEIN 1B)	C.G.	S.X.	Please select
0.01	1e-1	38	PsAffx.C7000010_at	PsAffx.C7000010	-	-	2e-2	At1g63650	EGL3 (ENHANCER OF GLABRA 3)	C.G.	S.X.	Please select
0.02	1e-1	38	PsAffx.C52000026_at	PsAffx.C52000026	-	-	4e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.01	1e-1	38	PsAffx.C336000003_at	PsAffx.C336000003	-	-	2e-1	At5g22310	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	PsAffx.C210000006_at	PsAffx.C210000006	-	-	1e-2	At5g41630	F-box family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-4	46	Arabidopsis thaliana	At5g05270	830409	chalcone-flavanone isomerase family protein	F:chalcone isomerase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-2	38	Hordeum vulgare	Contig24413_at	Contig24413	-	-	1e+1	At5g23411	unknown protein	C.G.	S.X.	Please select
0.11	4e-2	40	Oryza sativa	Os.37295.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	2e-3	44	Populus trichocarpa	PtpAffx.932.2.A1_at	CV268183	chalcone isomerase-like protein	-	7e-3	At5g05270	chalcone-flavanone isomerase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e-2	40	Triticum aestivum	TaAffx.71193.1.A1_at	BE492362	-	-	5e-5	At2g33510	protein binding	C.G.	S.X.	Please select
0.28	3e-23	107	Vitis vinifera	1620424_at	CB349003	hypothetical protein LOC100255217	-	2e-3	At5g05270	chalcone-flavanone isomerase family protein	C.G.	S.X.	Please select
0.04	2e-3	42	Zea mays	Zm.4213.1.A1_at	BG841480	IDP158 protein /// chalcone--flavonone isomerase /// chalcone--flavonone isomerase	-	1e-5	At5g05270	chalcone-flavanone isomerase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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