Gene omics information

Query gene ID	GmaAffx.93393.1.S1_s_at
Gene name	ascorbate peroxidase 1, cytosolic /// L-ascorbate peroxidase 2
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.86	93.0	GmaAffx.93393.1.S1_s_at	CF808604	ascorbate peroxidase 1, cytosolic /// L-ascorbate peroxidase 2	-	6e-22	At1g07890	APX1 (ascorbate peroxidase 1)	S.X.	H.G.	Please select
0.57	78.8	Gma.1278.1.S1_a_at	BE020433	-	-	4e-20	At1g03900	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	S.X.	H.G.	Please select
0.50	71.7	Gma.5244.3.S1_a_at	BM893397	-	-	1e-32	At2g32080	PUR ALPHA-1	S.X.	H.G.	Please select
0.43	60.6	Gma.17053.5.S1_s_at	BM309062	glyceraldehyde-3-phosphate dehydrogenase /// glyceraldehyde-3-dehydrogenase C subunit	-	2e-48	At1g13440	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	S.X.	H.G.	Please select
0.36	50.8	Gma.13160.1.S1_at	L10292.1	ascorbate peroxidase 1, cytosolic	-	5e-23	At1g07890	APX1 (ascorbate peroxidase 1)	S.X.	H.G.	Please select
0.27	35.7	GmaAffx.59019.1.S1_at	AW133348	-	-	1e-136	Atmg00160	-	S.X.	H.G.	Please select
0.18	22.3	Gma.10826.5.S1_x_at	BM732455	-	-	2e-108	At5g55190	RAN3 (RAN GTPASE 3)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.7	96.8	GSM293584	16_2089.2B.R181U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM293589	20_2073.2B.R308L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM293593	24_2082.2B.R035P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM293539	54_3007.2A.SLA2U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM293545	5_3015.2A.V7A3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM244923	6_V71.M1W2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.0	95.6	GSM244919	5_CON.M1W1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
2.9	95.4	GSM293237	25_1543.1P.R053L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM293250	37_C061.1P.SLP2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8	95.1	GSM293601	31_2069.2B.R213L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.80	0	1449	GmaAffx.89703.1.A1_at	CK606389	ascorbate peroxidase 1, cytosolic /// L-ascorbate peroxidase 2	-	3e-24	At1g07890	APX1 (ascorbate peroxidase 1)	C.G.	S.X.	Please select
0.80	0	1449	GmaAffx.89703.1.S1_at	CK606389	Ascorbate peroxidase 2 (APx2)	-	3e-24	At1g07890	APX1 (ascorbate peroxidase 1)	C.G.	S.X.	Please select
0.81	0	1340	Gma.13160.1.S1_at	L10292.1	ascorbate peroxidase 1, cytosolic	-	5e-23	At1g07890	APX1 (ascorbate peroxidase 1)	C.G.	S.X.	Please select
0.18	3e-43	176	GmaAffx.86592.2.A1_at	BI119573	Ascorbate peroxidase	-	2e-4	At4g35000	APX3 (ASCORBATE PEROXIDASE 3)	C.G.	S.X.	Please select
0.26	3e-43	176	GmaAffx.86592.2.S1_at	CA853313	Ascorbate peroxidase	-	2e-4	At4g35000	APX3 (ASCORBATE PEROXIDASE 3)	C.G.	S.X.	Please select
0.07	2e-16	87	GmaAffx.86592.1.A1_at	BM094190	-	-	2e-1	At4g35000	APX3 (ASCORBATE PEROXIDASE 3)	C.G.	S.X.	Please select
0.07	2e-16	87	GmaAffx.86592.1.S1_at	BI273655	-	-	2e-1	At4g35000	APX3 (ASCORBATE PEROXIDASE 3)	C.G.	S.X.	Please select
0.00	2e+0	34	PsAffx.C4000186_at	PsAffx.C4000186	-	-	2e-2	At3g12820	AtMYB10 (myb domain protein 10)	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.C31000047_at	PsAffx.C31000047	-	-	6e-1	At4g22920	NYE1 (NON-YELLOWING 1)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.46	6e-22	105	Arabidopsis thaliana	At1g07890	837304	APX1 (ascorbate peroxidase 1)	Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.21	4e-12	71	Hordeum vulgare	Contig1728_at	Contig1728	-	-	1e-14	At1g07890	APX1 (ascorbate peroxidase 1)	C.G.	S.X.	Please select
0.20	2e-11	71	Oryza sativa	Os03g0285700	AY254495.1	-	Ascorbate peroxidase (EC 1.11.1.11) (Cytosolicascorbate peroxidase 1)	3e-12	At1g07890	APX1 (ascorbate peroxidase 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.36	5e-23	109	Populus trichocarpa	Ptp.1376.1.S1_at	CV225839	hypothetical protein	-	6e-54	At3g09640	APX2 (ASCORBATE PEROXIDASE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	5e-10	65	Triticum aestivum	TaAffx.112576.1.S1_at	CA622767	-	-	2e-2	At1g07890	APX1 (ascorbate peroxidase 1)	C.G.	S.X.	Please select
0.11	2e-22	105	Vitis vinifera	1606498_s_at	CF214775	ascorbate peroxidase	-	7e-22	At3g09640	APX2 (ASCORBATE PEROXIDASE 2)	C.G.	S.X.	Please select
0.17	3e-12	71	Zea mays	Zm.3633.8.A1_at	AI881249	-	-	7e-29	At1g07890	APX1 (ascorbate peroxidase 1)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage