Gene omics information

Query gene ID	GmaAffx.93379.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.93379.1.S1_s_at	CF809104	-	-	2e-24	At1g49670	NQR	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.2179.1.S1_at	CD407818	-	-	6e-22	At4g22990	SPX (SYG1/Pho81/XPR1) domain-containing protein	S.X.	H.G.	Please select
0.30	40.4	Gma.2608.1.S1_at	BE058812	-	-	1e-9	At4g11740	SAY1	S.X.	H.G.	Please select
0.27	35.7	Gma.1106.1.S1_at	CD416163	-	-	1e-1	At5g53330	-	S.X.	H.G.	Please select
0.20	25.1	Gma.7674.1.A1_at	BQ785403	-	-	3e-36	At2g20130	LCV1 (LIKE COV 1)	S.X.	H.G.	Please select
0.19	23.7	Gma.3083.1.S1_at	BE474466	-	-	3e-65	At4g33430	BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.3	97.5	GSM209593	susceptible_6hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.0	97.2	GSM209596	resistant_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.9	97.1	GSM293114	29_1139.1O.R087L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM209597	susceptible_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.5	96.6	GSM209594	resistant_12hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.5	96.6	GSM209578	resistant_24hours_rep1 *failed QC*	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.4	96.4	GSM209583	resistant_6hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.3	96.2	GSM209584	susceptible_6hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.2	96.0	GSM209595	susceptible_12hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.1	95.8	GSM209585	resistant_12hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.60	0	1027	Gma.4351.1.S1_at	BE023594	-	-	2e-26	At1g49670	NQR	C.G.	S.X.	Please select
0.01	3e-2	40	PsAffx.C111000025_at	PsAffx.C111000025	-	-	4e-1	At5g19460	atnudt20 (Arabidopsis thaliana Nudix hydrolase homolog 20)	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C30000022_at	PsAffx.C30000022	-	-	2e-3	At5g06600	UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12)	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C175000037_at	PsAffx.C175000037	-	-	4e+0	At2g21990	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.90149.1.S1_at	CF805874	-	-	2e-2	At1g05835	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.90149.1.A1_s_at	CF805874	-	-	2e-2	At1g05835	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	Gma.14251.1.S1_at	CD418459	-	-	2e-12	At5g56940	ribosomal protein S16 family protein	C.G.	S.X.	Please select
0.03	2e+0	34	Gma.10860.3.A1_at	BE210775	-	-	1e+0	At5g52220	-	C.G.	S.X.	Please select
0.01	2e+0	34	Gma.10860.1.S1_at	AW350087	-	-	7e-26	At4g19860	lecithin:cholesterol acyltransferase family protein / LACT family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	2e-24	113	Arabidopsis thaliana	At1g49670	841391	NQR	molecular function has not been defined. Was shown involved in oxidative stress tolerance.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	5e-23	107	Hordeum vulgare	Contig9434_at	Contig9434	-	-	3e-27	At1g49670	NQR	C.G.	S.X.	Please select
0.12	2e-10	67	Oryza sativa	Os09g0459800	AK102736.1	-	Short-chain dehydrogenase/reductase SDR familyprotein	1e-13	At1g49670	NQR	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.21	6e-19	95	Populus trichocarpa	PtpAffx.204664.1.S1_s_at	pmrna9183	hypothetical protein	-	5e-52	At1g49670	NQR	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.21	1e-22	107	Triticum aestivum	Ta.932.2.S1_x_at	BE516963	-	-	1e-25	At1g49670	NQR	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1614334_at	CD012421	-	-	3e-1	At5g60900	RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Zea mays	Zm.12531.1.A1_at	AI740174	-	-	2e+0	At3g27328	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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