CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.93309.1.S1_s_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 74.2 GmaAffx.93309.1.S1_s_at CF808307 - - 1e-5 At4g22710 CYP706A2 S.X. H.G.
0.50 71.7 GmaAffx.28599.1.S1_at BE330504 - - 4e+0 At4g20000 VQ motif-containing protein S.X. H.G.
0.48 67.7 GmaAffx.74781.1.S1_at BE658510 - - 4e-28 At4g08150 KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA) S.X. H.G.
0.38 53.3 GmaAffx.74781.2.S1_at BI786304 - - 1e-14 At4g08150 KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA) S.X. H.G.
0.36 50.8 GmaAffx.43457.1.S1_at BM891228 - - 3e-1 At1g21830 unknown protein S.X. H.G.
0.25 32.6 Gma.10854.1.S1_at CA802334 - - 5e+0 At4g17500 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) S.X. H.G.
0.21 26.6 Gma.5177.1.S1_at BI971314 - - 3e-4 At3g20395 protein binding / zinc ion binding S.X. H.G.
0.21 26.6 GmaAffx.55896.1.S1_at BI975050 - - 6e-2 At2g10920 unknown protein S.X. H.G.
0.14 17.5 GmaAffx.36084.1.S1_at CD406632 - - 1e+1 At5g50510 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.3 99.5 GSM292211 74-C018.1A.R9A3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.8 99.5 GSM292168 23_1022.1A.R012P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.7 99.5 GSM293127 40_1148.1O.R093P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.6 99.5 GSM171611 13_W.E.M.5, Experimental replicate W GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
12.3 99.5 GSM292197 59_C014.1A.SLA3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.9 99.4 GSM294218 69_3140.2H.R9H3P_new, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.8 99.4 GSM171677 28_Z.E.M.5, Experimental replicate Z GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
11.7 99.4 GSM294244 92_2340.2H.R202P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.7 99.4 GSM292175 30-C012.1A.SLA2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.5 99.4 GSM293215 95_C050.1O.SLO3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 3e-124 446 Gma.3703.2.S1_at AW100501 - - 5e-5 At5g57260 CYP71B10 C.G. S.X.
0.28 3e-69 264 GmaAffx.37859.1.S1_at BU090520 - - 2e-1 At5g01570 unknown protein C.G. S.X.
0.22 1e-43 178 GmaAffx.60645.2.S1_at BQ742710 - - 8e-1 At5g26810 pectinesterase family protein C.G. S.X.
0.22 1e-43 178 GmaAffx.60645.2.S1_s_at BQ742710 - - 8e-1 At5g26810 pectinesterase family protein C.G. S.X.
0.32 5e-40 167 GmaAffx.83135.1.S1_at BQ453029 - - 8e-1 At4g00080 UNE11 (unfertilized embryo sac 11) C.G. S.X.
0.21 2e-30 135 GmaAffx.83206.1.S1_at BE610184 - - 2e-2 At3g26210 CYP71B23 C.G. S.X.
0.27 2e-24 115 GmaAffx.60645.1.S1_at BI701603 - - 2e-4 At3g53300 CYP71B31 C.G. S.X.
0.08 1e-12 75 Gma.6137.1.A1_at CD407869 - - 4e-2 At5g44620 CYP706A3 C.G. S.X.
0.14 2e-11 71 Gma.7061.1.S1_at BQ785979 - - 1e-3 At5g57260 CYP71B10 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-5 52 Arabidopsis thaliana At4g22710 828367 CYP706A2 member of CYP706A - - - C.G. S.X.
0.02 2e+0 34 Hordeum vulgare Contig16411_at Contig16411 - - 5e-1 At4g01883 - C.G. S.X.
0.03 4e-4 48 Oryza sativa Os03g0568400 9631.m03553 - E-class P450, group I family protein 1e-4 At1g13110 CYP71B7 C.G. S.X.
0.10 7e-2 40 Populus trichocarpa Ptp.5109.1.S1_at BU810061 cytochrome P450 /// cytochrome P450 /// cytochrome P450 - 6e-2 At3g44250 CYP71B38 C.G. S.X.
0.02 8e-1 36 Triticum aestivum TaAffx.29924.1.S1_at CA632639 - - 7e-2 At2g12900 DNA binding / transcription factor C.G. S.X.
0.09 6e-5 48 Vitis vinifera 1613920_at CB979957 hypothetical protein LOC100260935 - 2e+0 At1g07830 ribosomal protein L29 family protein C.G. S.X.
0.02 1e+0 34 Zea mays Zm.8654.1.A1_at BM334074 hypothetical protein LOC100280034 - 3e-2 At2g30490 C4H (CINNAMATE-4-HYDROXYLASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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