Gene omics information

Query gene ID	GmaAffx.93176.1.S1_s_at
Gene name	expansin
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	74.2	GmaAffx.93176.1.S1_s_at	CF808901	expansin	-	2e-24	At2g28950	ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6)	S.X.	H.G.	Please select
0.50	71.7	Gma.2590.8.S1_at	BM093439	-	-	2e-47	At5g48300	ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1)	S.X.	H.G.	Please select
0.36	50.8	Gma.2119.3.S1_at	BQ253050	-	-	2e-51	At5g03650	SBE2.2 (starch branching enzyme 2.2)	S.X.	H.G.	Please select
0.35	48.6	GmaAffx.17650.3.S1_at	AW202246	homogentisate phytyltransferase VTE2-2	-	2e-1	At3g06040	ribosomal protein L12 family protein	S.X.	H.G.	Please select
0.22	28.1	GmaAffx.17213.1.S1_at	BU546744	-	-	2e-36	At2g28000	CPN60A (CHAPERONIN-60ALPHA)	S.X.	H.G.	Please select
0.19	23.7	GmaAffx.91779.1.S1_s_at	CF807504	glutamate 1-semialdehyde aminotransferase	-	9e-48	At5g63570	GSA1 (GLUTAMATE-1-SEMIALDEHYDE-2,1-AMINOMUTASE)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
95.2	100.0	GSM209582	mock_0hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
53.8	99.9	GSM245938	Leaf_LCO treated_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
41.6	99.9	GSM245937	Leaf_LCO treated_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
41.2	99.9	GSM245935	Leaf_Water Control_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
39.0	99.9	GSM209580	resistant_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
31.3	99.9	GSM245936	Leaf_LCO treated_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
29.2	99.8	GSM209581	susceptible_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
23.6	99.8	GSM238041	Soybean-Bayfield-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
23.2	99.8	GSM238060	Soybean-S03W4-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
21.3	99.8	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1136	GmaAffx.93176.1.S1_at	CF808901	expansin	-	2e-24	At2g28950	ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6)	C.G.	S.X.	Please select
0.58	0	958	Gma.7006.1.S1_at	AF516880.1	expansin	-	6e-26	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	C.G.	S.X.	Please select
0.27	3e-20	99	Gma.13110.2.S1_at	BI785748	-	-	2e-14	At2g03090	ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)	C.G.	S.X.	Please select
0.18	1e-16	87	GmaAffx.85557.1.S1_at	BG237376	-	-	2e-29	At2g03090	ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)	C.G.	S.X.	Please select
0.29	1e-13	77	GmaAffx.42013.1.S1_at	BM886535	-	-	4e-12	At2g03090	ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)	C.G.	S.X.	Please select
0.12	7e-12	71	GmaAffx.67477.3.S1_at	BE802373	-	-	1e-9	At3g29030	EXPA5 (EXPANSIN A5)	C.G.	S.X.	Please select
0.10	4e-10	65	Gma.13133.1.S1_at	AW317404	-	-	1e-23	At2g03090	ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)	C.G.	S.X.	Please select
0.23	2e-9	63	Gma.812.1.S1_at	CD399742	-	-	2e-19	At5g05290	ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)	C.G.	S.X.	Please select
0.14	2e-9	63	Gma.2014.1.S1_at	AW348565	expansin	-	3e-15	At2g03090	ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	2e-24	113	Arabidopsis thaliana	At2g28950	817444	ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6)	Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.31	1e-14	79	Hordeum vulgare	Contig3674_at	Contig3674	-	-	1e-14	At2g37640	EXP3	C.G.	S.X.	Please select
0.28	4e-17	89	Oryza sativa	Os05g0477600	U85246.1	-	Alpha-expansin OsEXPA4	2e-16	At1g69530	ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.51	3e-63	242	Populus trichocarpa	Ptp.1806.1.S1_s_at	CN523732	hypothetical protein	-	7e-25	At2g28950	ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.33	4e-31	135	Triticum aestivum	Ta.5046.1.S1_at	AY543535.1	expansin EXPA9	-	3e-24	At2g37640	EXP3	C.G.	S.X.	Please select
0.52	5e-108	389	Vitis vinifera	1608191_at	CD798831	hypothetical protein LOC100245911	-	4e-20	At2g39700	ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)	C.G.	S.X.	Please select
0.41	9e-46	182	Zea mays	Zm.13728.2.S1_at	AY106266.1	-	-	1e-14	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage