CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.93138.1.S1_s_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 74.2 GmaAffx.93138.1.S1_s_at CF808863 - - 2e-27 At2g32080 PUR ALPHA-1 S.X. H.G.
0.77 90.3 GmaAffx.75701.1.S1_at AW396525 - - 6e-14 At4g38130 HD1 (HISTONE DEACETYLASE 1) S.X. H.G.
0.67 86.1 GmaAffx.93267.1.S1_s_at CF808992 nodulin 35 - 3e-10 At2g26230 uricase / urate oxidase / nodulin 35, putative S.X. H.G.
0.47 66.6 GmaAffx.58877.1.S1_at BG044001 - - 2e-57 At4g00710 BSK3 (BR-SIGNALING KINASE 3) S.X. H.G.
0.36 50.8 GmaAffx.75704.1.S1_at AI443867 - - 7e-1 At4g09940 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein S.X. H.G.
0.35 48.6 Gma.9706.3.S1_x_at AW133151 - - 2e-5 At2g39840 TOPP4 S.X. H.G.
0.26 33.9 Gma.2892.2.S1_a_at BI424590 - - 5e-47 At1g29150 ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.7 94.8 GSM293795 39_3055.2D.SLD1U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6 94.5 GSM244916 4_SLO.I3U1.CEL, Experimental replicate 1 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
2.6 94.5 GSM293310 91_1180.1P.R110P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5 94.2 GSM293888 39_3081.2E.SLE2U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5 94.2 GSM293840 7_3061.2D.SLD2L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5 94.2 GSM293516 33_3001.2A.SLA1L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.4 93.8 GSM294134 88_3123.2G.SLG3U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3 93.3 GSM293355 42_C077.1Q.SLQ1U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3 93.3 GSM293776 21_3069.2D.V7D3L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3 93.3 GSM293614 43_2066.2B.R129P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.78 0 1421 Gma.5244.3.S1_a_at BM893397 - - 1e-32 At2g32080 PUR ALPHA-1 C.G. S.X.
0.15 4e-57 222 Gma.5244.2.S1_at CD415693 - - 1e-22 At2g32080 PUR ALPHA-1 C.G. S.X.
0.01 1e-1 38 PsAffx.C3000163_at PsAffx.C3000163 - - 3e+0 At5g40440 ATMKK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3) C.G. S.X.
0.01 5e-1 36 PsAffx.C47000035_at PsAffx.C47000035 - - 4e+0 At3g04360 - C.G. S.X.
0.01 5e-1 36 PsAffx.C193000007_at PsAffx.C193000007 - - 7e-2 At3g15210 ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4) C.G. S.X.
0.01 5e-1 36 PsAffx.C118000007_at PsAffx.C118000007 - - 1e+0 At1g75190 unknown protein C.G. S.X.
0.02 2e+0 34 PsAffx.CL746Contig1_at PsAffx.CL746Contig1 - - 1e-1 At5g27370 unknown protein C.G. S.X.
0.01 2e+0 34 PsAffx.C6000163_at PsAffx.C6000163 - - 9e-1 At5g42900 unknown protein C.G. S.X.
0.01 2e+0 34 PsAffx.C56000019_at PsAffx.C56000019 - - 2e+0 At5g12440 nucleic acid binding / nucleotide binding / zinc ion binding C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 2e-27 123 Arabidopsis thaliana At2g32080 817768 PUR ALPHA-1 similar to the conserved animal nuclear protein PUR alpha which was implicated in the control of gene transcription and DNA replication - - - C.G. S.X.
0.22 2e-26 119 Hordeum vulgare Contig7564_at Contig7564 - - 4e-5 At2g32080 PUR ALPHA-1 C.G. S.X.
0.23 2e-26 121 Oryza sativa Os01g0260700 CB659887 - PUR-alpha/beta/gamma, DNA/RNA-binding familyprotein 3e-12 At2g32080 PUR ALPHA-1 C.G. S.X.
0.51 5e-78 291 Populus trichocarpa PtpAffx.134857.1.S1_at CX185540 hypothetical protein - 2e-43 At2g32080 PUR ALPHA-1 C.G. S.X.
0.23 6e-28 125 Triticum aestivum Ta.4232.1.S1_s_at CK169440 - - 5e-5 At2g32080 PUR ALPHA-1 C.G. S.X.
0.14 9e-24 109 Vitis vinifera 1618360_at CF204032.1 - - 5e-13 At2g32080 PUR ALPHA-1 C.G. S.X.
0.18 2e-25 115 Zea mays Zm.2102.1.A1_at AW267527 hypothetical protein LOC100274069 - 3e-3 At2g32080 PUR ALPHA-1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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