Gene omics information

Query gene ID	GmaAffx.93066.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.1	GmaAffx.93066.1.S1_s_at	CF808791	-	-	7e-36	At4g29670	thioredoxin family protein	S.X.	H.G.	Please select
0.73	88.9	GmaAffx.1815.2.S1_at	AW201478	-	-	1e-43	At5g66470	GTP binding / RNA binding	S.X.	H.G.	Please select
0.53	74.2	GmaAffx.17286.2.S1_at	BQ611499	-	-	2e-17	At5g09230	SRT2 (SIRTUIN 2)	S.X.	H.G.	Please select
0.50	71.7	Gma.16537.2.S1_at	BE191493	-	-	1e-49	At3g05350	aminopeptidase/ hydrolase	S.X.	H.G.	Please select
0.44	63.3	Gma.18060.1.S1_at	BU578633	-	-	8e-22	At3g04870	ZDS (ZETA-CAROTENE DESATURASE)	S.X.	H.G.	Please select
0.25	32.6	GmaAffx.70388.1.S1_at	AW509072	-	-	4e+0	At2g47810	NF-YB5 (NUCLEAR FACTOR Y, SUBUNIT B5)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.3	99.8	GSM245937	Leaf_LCO treated_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
18.6	99.7	GSM245938	Leaf_LCO treated_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
17.4	99.7	GSM245936	Leaf_LCO treated_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
16.6	99.6	GSM238049	Soybean-Mandarin-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
16.2	99.6	GSM245935	Leaf_Water Control_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
15.6	99.6	GSM245934	Leaf_Water Control_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
15.4	99.6	GSM238048	Soybean-Mandarin-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
14.3	99.6	GSM238051	Soybean-Mandarin-7-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
14.2	99.6	GSM238050	Soybean-Mandarin-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
13.6	99.5	GSM245933	Leaf_Water Control_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1076	GmaAffx.93066.1.S1_at	CF808791	-	-	7e-36	At4g29670	thioredoxin family protein	C.G.	S.X.	Please select
0.65	0	870	Gma.15088.1.S1_at	CD402034	-	-	6e-38	At4g29670	thioredoxin family protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C158000005_at	PsAffx.C158000005	-	-	4e+0	Atmg00940	-	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C158000005_s_at	PsAffx.C158000005	-	-	4e+0	Atmg00940	-	C.G.	S.X.	Please select
0.02	2e+0	34	GmaAffx.6182.1.A1_at	BI787004	-	-	6e+0	At5g12060	self-incompatibility protein-related	C.G.	S.X.	Please select
0.02	2e+0	34	GmaAffx.6182.1.S1_at	BE610496	-	-	6e+0	At5g12060	self-incompatibility protein-related	C.G.	S.X.	Please select
0.01	6e+0	32	PsAffx.C50000005_at	PsAffx.C50000005	-	-	8e-1	At2g28305	unknown protein	C.G.	S.X.	Please select
0.01	6e+0	32	PsAffx.C325000004_at	PsAffx.C325000004	-	-	2e-1	At3g25890	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.01	6e+0	32	PsAffx.C121000031_at	PsAffx.C121000031	-	-	3e+0	At5g49100	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	7e-36	151	Arabidopsis thaliana	At4g29670	829088	thioredoxin family protein	Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate dehydrogenase.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.29	6e-10	63	Hordeum vulgare	Contig21286_at	Contig21286	-	-	4e-23	At4g29670	thioredoxin family protein	C.G.	S.X.	Please select
0.29	1e-26	121	Oryza sativa	Os05g0200100	AK061208.1	-	Thioredoxin-related domain containing protein	3e-30	At4g29670	thioredoxin family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.37	4e-69	262	Populus trichocarpa	PtpAffx.7388.2.S1_at	CV244716	hypothetical protein	-	1e-11	At4g29670	thioredoxin family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	7e-5	48	Triticum aestivum	Ta.6434.1.S1_at	CD930074	-	-	3e-15	At4g29670	thioredoxin family protein	C.G.	S.X.	Please select
0.45	4e-90	329	Vitis vinifera	1618808_at	CF204376.1	-	-	1e-25	At4g29670	thioredoxin family protein	C.G.	S.X.	Please select
0.04	5e-1	34	Zea mays	ZmAffx.571.1.A1_at	AI714687	hypothetical protein LOC100191288	-	3e+0	At5g20230	ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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