Gene omics information

Query gene ID	GmaAffx.92886.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	78.2	GmaAffx.92886.1.S1_at	CF808611	-	-	3e-41	At5g09900	EMB2107 (EMBRYO DEFECTIVE 2107)	S.X.	H.G.	Please select
0.53	74.2	GmaAffx.90266.1.S1_s_at	CF805991	-	-	8e-20	At5g64760	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.85638.1.S1_at	BF425777	-	-	4e-13	At5g55000	FIP2	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.92886.1.S1_s_at	CF808611	-	-	3e-41	At5g09900	EMB2107 (EMBRYO DEFECTIVE 2107)	S.X.	H.G.	Please select
0.35	48.6	GmaAffx.58610.1.S1_at	BF066199	-	-	1e-2	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	S.X.	H.G.	Please select
0.27	35.7	GmaAffx.92182.1.S1_s_at	CF807907	-	-	9e-1	At1g69800	CBS domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.6	98.7	GSM293390	74_1588.1Q.R230P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.1	98.5	GSM294244	92_2340.2H.R202P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM293240	28_1208.1P.R128P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM293247	34_C066.1P.R9P2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM293060	61_C034.1N.R9N3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM294132	86_3112.2G.R9G1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM293367	53_1551.1Q.R100U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM293289	72_1238.1P.R145P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM293393	77_C086.1Q.SLQ3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM293911	5_2236.2E.R249P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1108	GmaAffx.92886.1.S1_s_at	CF808611	-	-	3e-41	At5g09900	EMB2107 (EMBRYO DEFECTIVE 2107)	C.G.	S.X.	Please select
0.43	0	932	Gma.15861.1.S1_at	BM523547	-	-	1e-46	At5g09900	EMB2107 (EMBRYO DEFECTIVE 2107)	C.G.	S.X.	Please select
0.36	7e-126	450	Gma.16788.1.S1_at	CD410585	-	-	8e-32	At5g64760	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)	C.G.	S.X.	Please select
0.09	3e-17	89	GmaAffx.90266.1.S1_s_at	CF805991	-	-	8e-20	At5g64760	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)	C.G.	S.X.	Please select
0.05	6e-3	42	Gma.10914.1.S1_at	BI971562	-	-	5e-1	At3g61172	LCR8 (Low-molecular-weight cysteine-rich 8)	C.G.	S.X.	Please select
0.04	1e-1	38	GmaAffx.86770.1.S1_at	AW598003	-	-	5e-15	At1g45000	26S proteasome regulatory complex subunit p42D, putative	C.G.	S.X.	Please select
0.03	4e-1	36	GmaAffx.78790.1.S1_at	BQ298762	-	-	1e+0	At2g28950	ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6)	C.G.	S.X.	Please select
0.03	4e-1	36	GmaAffx.61892.1.S1_at	BF716032	-	-	2e-40	At5g35730	EXS family protein / ERD1/XPR1/SYG1 family protein	C.G.	S.X.	Please select
0.03	2e+0	34	PsAffx.C43000007_at	PsAffx.C43000007	-	-	5e+0	At5g62080	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	3e-41	169	Arabidopsis thaliana	At5g09900	830850	EMB2107 (EMBRYO DEFECTIVE 2107)	Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous gene RPN5b but also appears to exert independent effects.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	6e-7	54	Hordeum vulgare	Contig6375_at	Contig6375	-	-	2e-35	At5g09900	EMB2107 (EMBRYO DEFECTIVE 2107)	C.G.	S.X.	Please select
0.14	1e-17	91	Oryza sativa	Os03g0851300	AK105457.1	-	Proteasome component region PCI domain containingprotein	5e-24	At5g09900	EMB2107 (EMBRYO DEFECTIVE 2107)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.31	3e-51	202	Populus trichocarpa	PtpAffx.17440.1.S1_a_at	CV229151	hypothetical protein	-	1e-49	At5g09900	EMB2107 (EMBRYO DEFECTIVE 2107)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	5e-6	52	Triticum aestivum	Ta.14571.1.S1_at	CA602501	-	-	6e-42	At5g09900	EMB2107 (EMBRYO DEFECTIVE 2107)	C.G.	S.X.	Please select
0.38	1e-56	218	Vitis vinifera	1617936_at	BQ797736	similar to 26S proteasome subunit RPN5b	-	3e-23	At5g64760	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)	C.G.	S.X.	Please select
0.08	5e-13	73	Zea mays	Zm.12704.2.A1_at	BM080159	-	-	4e-21	At5g09900	EMB2107 (EMBRYO DEFECTIVE 2107)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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