CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.92881.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 GmaAffx.92881.1.S1_at CF808606 - - 1e-4 At5g48655 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.33 46.1 GmaAffx.80513.1.S1_at AI900215 - - 2e-2 At3g04610 FLK (flowering locus KH domain) S.X. H.G.
0.17 21.2 GmaAffx.85246.2.S1_at BM954924 - - 2e-9 At5g14250 COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13) S.X. H.G.
0.17 21.2 GmaAffx.88112.1.S1_at AW185398 - - 2e-9 At3g09180 unknown protein S.X. H.G.
0.08 11.0 Gma.6483.1.S1_at BE821156 - - 2e-18 At4g19003 VPS25 S.X. H.G.
0.06 9.0 GmaAffx.91748.1.S1_s_at CF807473 - - 1e-102 At2g01970 endomembrane protein 70, putative S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.6 99.4 GSM292923 95_1465.1L.R283L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1 97.3 GSM294425 80_3168.2J.R9J1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7 96.8 GSM293611 40_3021.2B.R9B1L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6 96.7 GSM294175 38_3132.2H.R9H1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6 96.7 GSM293584 16_2089.2B.R181U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5 96.6 GSM293367 53_1551.1Q.R100U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4 96.4 GSM292706 53_C176.1J.R9J3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3 96.2 GSM292825 82_C184.1K.R9K1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3 96.2 GSM292162 15-1002.1A.R001P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3 96.2 GSM293247 34_C066.1P.R9P2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1467 GmaAffx.92881.1.S1_s_at CF808606 - - 1e-4 At5g48655 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.72 0 1180 Gma.5235.1.S1_at CA935749 - - 2e-4 At5g48655 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.19 5e-32 139 Gma.13121.1.S1_at CD396748 - - 4e-1 At5g48655 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.19 5e-32 139 Gma.13121.1.S1_a_at CD396748 - - 4e-1 At5g48655 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.11 3e-18 93 GmaAffx.90335.1.S1_at CF806060 - - 5e+0 At4g31740 - C.G. S.X.
0.03 5e-1 36 GmaAffx.79411.4.S1_at CA935608 - - 4e+0 Atmg00285 - C.G. S.X.
0.03 5e-1 36 GmaAffx.14025.1.S1_at BU550176 - - 3e-1 At1g75550 glycine-rich protein C.G. S.X.
0.03 5e-1 36 Gma.9518.1.S1_at CD393486 - - 7e-33 At2g44360 unknown protein C.G. S.X.
0.03 5e-1 36 Gma.456.1.A1_at AW309591 - - 2e-9 At2g18220 - C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 1e-4 48 Arabidopsis thaliana At5g48655 834923 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to chitin;C:unknown;MFOPV - - - C.G. S.X.
0.02 4e-2 38 Hordeum vulgare Contig3650_at Contig3650 - - 3e+0 At1g44835 YbaK/prolyl-tRNA synthetase family protein C.G. S.X.
0.02 3e+0 34 Oryza sativa Os08g0355700 9636.m02636 - - 2e+0 At3g01800 ribosome recycling factor family protein / ribosome releasing factor family protein C.G. S.X.
0.02 2e+0 34 Populus trichocarpa PtpAffx.31354.1.A1_at CV238945 hypothetical protein - 2e-6 At5g21100 L-ascorbate oxidase, putative C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.11763.1.A1_at BQ170499 - - 2e-1 At1g63120 ATRBL2 (Arabidopsis thaliana Rhomboid-like 2) C.G. S.X.
0.12 3e-11 67 Vitis vinifera 1607109_at CF403653 hypothetical protein LOC100246586 - 5e-3 At5g48655 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 3e+0 32 Zea mays Zm.9844.1.A1_at BM340870 - - 1e+1 At2g46330 AGP16 (ARABINOGALACTAN PROTEIN 16) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage