Gene omics information

Query gene ID	GmaAffx.92861.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	71.7	GmaAffx.92861.1.S1_s_at	CF808586	-	-	8e-2	At1g20693	HMGB2 (HIGH MOBILITY GROUP B 2)	S.X.	H.G.	Please select
0.63	82.9	GmaAffx.24666.1.S1_at	CA783210	-	-	2e-1	At2g39705	RTFL8 (ROTUNDIFOLIA LIKE 8)	S.X.	H.G.	Please select
0.46	65.5	Gma.11341.3.S1_s_at	BM177332	-	-	8e-26	At4g17900	zinc-binding family protein	S.X.	H.G.	Please select
0.42	59.3	PsAffx.psHA006iH10r_s_at	PsAffx.psHA006iH10r	-	-	1e+0	At2g28140	unknown protein	S.X.	H.G.	Please select
0.33	46.1	GmaAffx.58176.1.S1_at	BU577254	-	-	3e-1	At2g39540	gibberellin-regulated family protein	S.X.	H.G.	Please select
0.32	43.7	GmaAffx.65140.1.S1_at	BI700031	-	-	7e-2	At4g33670	L-galactose dehydrogenase (L-GalDH)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.7	97.8	GSM292596	26_C146.1I.V7I1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM293956	13_2286.2F.R031P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM292653	7_C156.1I.V7I2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM293608	38_2088.2B.R293P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM292222	16_C029.1B.R9B2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM293835	75_2148.2D.R010P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM294109	65_2324.2G.R214P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM292589	19_C160.1I.V7I3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM293856	9_3060.2D.V7D1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM293718	53_2144.2C.R109P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.94	0	850	GmaAffx.92861.1.S1_at	CF808586	-	-	8e-2	At1g20693	HMGB2 (HIGH MOBILITY GROUP B 2)	C.G.	S.X.	Please select
0.94	0	850	GmaAffx.92861.1.S1_x_at	CF808586	-	-	8e-2	At1g20693	HMGB2 (HIGH MOBILITY GROUP B 2)	C.G.	S.X.	Please select
0.41	3e-101	369	GmaAffx.33081.1.S1_s_at	BQ453706	-	-	3e+0	At1g28306	-	C.G.	S.X.	Please select
0.11	2e-6	54	Gma.11929.1.S1_at	AI437723	HMG-1 like protein gene	-	2e-13	At1g20693	HMGB2 (HIGH MOBILITY GROUP B 2)	C.G.	S.X.	Please select
0.11	2e-6	54	Gma.11929.1.S1_x_at	AI437723	HMG-1 like protein gene	-	2e-13	At1g20693	HMGB2 (HIGH MOBILITY GROUP B 2)	C.G.	S.X.	Please select
0.02	7e-3	42	PsAffx.C91000052_at	PsAffx.C91000052	-	-	7e-1	At2g42870	PAR1 (PHY RAPIDLY REGULATED 1)	C.G.	S.X.	Please select
0.14	7e-3	42	GmaAffx.92359.1.S1_s_at	CF808084	HMG-1 like protein gene	-	5e-6	At1g20696	HMGB3 (HIGH MOBILITY GROUP B 3)	C.G.	S.X.	Please select
0.03	3e-2	40	PsAffx.CL547Contig1_at	PsAffx.CL547Contig1	-	-	6e+0	At3g60540	sec61beta family protein	C.G.	S.X.	Please select
0.02	3e-2	40	PsAffx.C118000035_s_at	PsAffx.C118000035	-	-	2e+1	At5g53290	CRF3 (CYTOKININ RESPONSE FACTOR 3)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	8e-2	38	Arabidopsis thaliana	At1g20693	838658	HMGB2 (HIGH MOBILITY GROUP B 2)	Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-1	36	Hordeum vulgare	EBro08_SQ002_H13_at	EBro08_SQ002_H13	-	-	6e-1	At3g43432	unknown protein	C.G.	S.X.	Please select
0.07	4e-2	40	Oryza sativa	Os09g0551600	D29711.1	-	HMGd1 protein (Nucleasome/chromatin assemblyfactor D protein NFD101)	1e-1	Atmg00840	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.23	9e-24	111	Populus trichocarpa	PtpAffx.13687.1.S1_at	DN492122	high mobility group family	-	4e-8	At3g51880	HMGB1 (HIGH MOBILITY GROUP B 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	TaAffx.56445.1.S1_x_at	CA651526	-	-	4e-1	At3g20600	NDR1 (non race-specific disease resistance 1)	C.G.	S.X.	Please select
0.35	6e-40	163	Vitis vinifera	1612752_at	CF201925.1	-	-	3e-20	At3g51880	HMGB1 (HIGH MOBILITY GROUP B 1)	C.G.	S.X.	Please select
0.07	2e+0	32	Zea mays	Zm.6732.1.S1_s_at	AF440221.1	HMG-like nucleosome/chromatin assembly factor D	-	3e-11	At1g20696	HMGB3 (HIGH MOBILITY GROUP B 3)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage