CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.92829.1.S1_s_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.75 89.5 GmaAffx.92829.1.S1_s_at CF807177 - - 2e-18 At1g80600 WIN1 (HOPW1-1-INTERACTING 1) S.X. H.G.
0.63 82.9 GmaAffx.72812.1.S1_at BU091321 - - 4e+0 At4g25080 CHLM (magnesium-protoporphyrin IX methyltransferase) S.X. H.G.
0.60 80.7 Gma.4549.1.S1_s_at BI974530 - - 2e-6 At2g25110 SDF2 (STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN PRECURSOR) S.X. H.G.
0.40 57.1 GmaAffx.90559.1.S1_s_at CF806284 - - 2e-23 At3g48890 ATMP2 S.X. H.G.
0.36 50.8 GmaAffx.91821.1.S1_s_at CF807546 - - 7e-12 At1g80360 aminotransferase class I and II family protein S.X. H.G.
0.34 47.2 Gma.5057.2.S1_x_at BE475334 - - 7e-21 At5g13430 ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative S.X. H.G.
0.29 39.0 GmaAffx.78674.1.S1_at BG405007 - - 2e-10 At4g31180 aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.5 98.3 GSM309528 storage protein suppression expt, control tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
5.3 98.2 GSM309557 storage protein suppression expt, RNAi biol rep1, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
5.3 98.2 GSM309529 storage protein suppression expt, RNAi biol rep1, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
4.9 98.0 GSM292913 86_1447.1L.R273L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6 97.7 GSM309527 storage protein suppression expt, control tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
4.5 97.7 GSM293600 30_2081.2B.R035L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5 97.7 GSM309530 storage protein suppression expt, RNAi biol rep2, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
4.4 97.6 GSM293521 38_2003.2A.R270L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3 97.5 GSM309531 storage protein suppression expt, RNAi biol rep2, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
4.1 97.3 GSM209590 susceptible_48hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.60 0 1548 Gma.2543.1.S1_at AI960145 - - 7e-20 At1g80600 WIN1 (HOPW1-1-INTERACTING 1) C.G. S.X.
0.01 6e-1 36 GmaAffx.3619.1.S1_at BQ785103 - - 5e-76 At1g75380 wound-responsive protein-related C.G. S.X.
0.03 2e+0 34 GmaAffx.75549.1.S1_at BG839301 - - 5e-9 At5g43560 meprin and TRAF homology domain-containing protein / MATH domain-containing protein C.G. S.X.
0.02 2e+0 34 Gma.7317.1.A1_at BU546946 - - 1e+0 At4g13965 - C.G. S.X.
0.01 2e+0 34 Gma.11002.1.S1_at AW350981 - - 0 At1g15690 AVP1 C.G. S.X.
0.02 9e+0 32 PsAffx.CL809Contig1_at PsAffx.CL809Contig1 - - 2e-3 At5g42740 glucose-6-phosphate isomerase, cytosolic (PGIC) C.G. S.X.
0.01 9e+0 32 PsAffx.C9000058_at PsAffx.C9000058 - - 6e+0 At2g32235 unknown protein C.G. S.X.
0.00 9e+0 32 PsAffx.C81000013_at PsAffx.C81000013 - - 3e-3 At1g20920 DEAD box RNA helicase, putative C.G. S.X.
0.01 9e+0 32 PsAffx.C58000037_at PsAffx.C58000037 - - 4e+0 At4g15150 glycine-rich protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 2e-18 93 Arabidopsis thaliana At1g80600 844399 WIN1 (HOPW1-1-INTERACTING 1) Encodes HopW1-1-Interacting protein 1 (WIN1). Interacts with the P. syringae effector HopW1-1. WIN1 is a putative acetylornithine transaminase. Modulates plant defenses against bacteria. Three WIN proteins are identified so far (WIN1: AT1G80600; WIN2: AT4G31750; WIN3: AT5G13320). - - - C.G. S.X.
0.02 3e+0 32 Hordeum vulgare Contig25401_s_at Contig25401 - - 4e-3 At1g78710 unknown protein C.G. S.X.
0.02 1e+1 32 Oryza sativa Os11g0160000 9639.m00537 - Arabidopsis conserved protein family protein 4e-1 At4g22810 DNA-binding protein-related C.G. S.X.
0.41 7e-19 95 Populus trichocarpa Ptp.5438.1.S1_at CK106216 hypothetical protein - 1e-14 At1g80600 WIN1 (HOPW1-1-INTERACTING 1) C.G. S.X.
0.03 4e-1 36 Triticum aestivum Ta.12337.1.S1_at CA638052 - - 5e-15 At5g46180 delta-OAT C.G. S.X.
0.17 9e-12 69 Vitis vinifera 1609204_at CF607580 hypothetical protein LOC100242776 - 1e+0 At5g12240 unknown protein C.G. S.X.
0.02 1e+1 30 Zea mays Zm.9923.1.A1_at BM349111 - - 1e+0 At2g46130 WRKY43 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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