Gene omics information

Query gene ID	GmaAffx.92678.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	80.7	GmaAffx.92678.1.S1_s_at	CF808403	-	-	6e-35	At2g34850	MEE25 (maternal effect embryo arrest 25)	S.X.	H.G.	Please select
0.67	86.1	Gma.6570.1.S1_s_at	AW350797	-	-	6e-48	At1g30620	MUR4 (MURUS 4)	S.X.	H.G.	Please select
0.60	80.7	Gma.3568.1.S1_x_at	BI941735	-	-	1e-54	At5g10260	AtRABH1e (Arabidopsis Rab GTPase homolog H1e)	S.X.	H.G.	Please select
0.44	63.3	Gma.3568.2.S1_at	BM308236	-	-	3e-42	At2g44610	RAB6A	S.X.	H.G.	Please select
0.40	57.1	Gma.6454.1.S1_at	BM271508	-	-	2e-90	At5g25265	unknown protein	S.X.	H.G.	Please select
0.40	57.1	Gma.10802.1.S1_a_at	BI969275	Clone GMFP1 isoprenylated protein	-	4e-12	At3g44110	ATJ3	S.X.	H.G.	Please select
0.35	48.6	Gma.4068.1.S1_at	CD399501	-	-	7e-26	At3g60800	zinc finger (DHHC type) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.5	98.3	GSM293419	10_C108.1R.R9R3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM294129	83_2310.2G.R097P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9	98.0	GSM294219	6_2368.2H.R229P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8	97.9	GSM294218	69_3140.2H.R9H3P_new, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM294132	86_3112.2G.R9G1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM292969	47_C222.1M.R9M1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM293016	21_1058.1N.R033P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4	97.6	GSM294104	60_2296.2G.R136P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM294607	74_2540.2L.R156P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM292195	57_1024.1A.R013P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	0	670	Gma.6570.1.S1_at	AW350797	-	-	6e-48	At1g30620	MUR4 (MURUS 4)	C.G.	S.X.	Please select
0.33	0	670	Gma.6570.1.S1_s_at	AW350797	-	-	6e-48	At1g30620	MUR4 (MURUS 4)	C.G.	S.X.	Please select
0.09	1e-2	40	GmaAffx.4029.1.A1_at	BE803273	-	-	2e-24	At2g34850	MEE25 (maternal effect embryo arrest 25)	C.G.	S.X.	Please select
0.09	1e-2	40	GmaAffx.4029.1.S1_at	BG044865	-	-	2e-24	At2g34850	MEE25 (maternal effect embryo arrest 25)	C.G.	S.X.	Please select
0.03	2e-1	36	PsAffx.C55000056_at	PsAffx.C55000056	-	-	4e-2	At2g21150	XCT (XAP5 CIRCADIAN TIMEKEEPER)	C.G.	S.X.	Please select
0.03	2e-1	36	GmaAffx.21456.1.S1_at	AI496328	-	-	4e-4	At5g55850	NOI	C.G.	S.X.	Please select
0.01	9e-1	34	PsAffx.C32000030_at	PsAffx.C32000030	-	-	3e-1	At3g28917	MIF2 (MINI ZINC FINGER 2)	C.G.	S.X.	Please select
0.06	9e-1	34	GmaAffx.11999.1.S1_at	AW567661	-	-	5e-1	At5g13870	EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4)	C.G.	S.X.	Please select
0.00	4e+0	32	PsAffx.C63000082_at	PsAffx.C63000082	-	-	4e-3	At3g07020	UDP-glucose:sterol glucosyltransferase (UGT80A2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	6e-35	147	Arabidopsis thaliana	At2g34850	818050	MEE25 (maternal effect embryo arrest 25)	F:coenzyme binding, UDP-glucose 4-epimerase activity, binding, catalytic activity;P:embryonic development ending in seed dormancy, pollen tube development, nucleotide-sugar metabolic process;C:cellular_component unknown;BOPMAFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	1e-9	61	Hordeum vulgare	Contig10276_at	Contig10276	-	-	8e-44	At2g34850	MEE25 (maternal effect embryo arrest 25)	C.G.	S.X.	Please select
0.16	1e-13	77	Oryza sativa	Os08g0129700	AB099292.1	-	NAD-dependent epimerase/dehydratase family protein	7e-14	At1g30620	MUR4 (MURUS 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.34	4e-49	194	Populus trichocarpa	Ptp.4642.1.S1_at	CX655000	hypothetical protein	-	1e-84	At1g30620	MUR4 (MURUS 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	3e-21	101	Triticum aestivum	Ta.7657.1.S1_s_at	CK208353	-	-	1e-18	At1g30620	MUR4 (MURUS 4)	C.G.	S.X.	Please select
0.33	2e-20	97	Vitis vinifera	1614184_at	CF604220	hypothetical protein LOC100250343	-	1e-47	At4g20460	NAD-dependent epimerase/dehydratase family protein	C.G.	S.X.	Please select
0.15	1e-9	61	Zea mays	Zm.9488.1.A1_at	BM336207	UDP-arabinose 4-epimerase 2	-	4e-14	At1g30620	MUR4 (MURUS 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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