Gene omics information

Query gene ID	GmaAffx.92345.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	92.5	GmaAffx.92345.1.S1_s_at	CF808070	-	-	9e-45	At3g50590	nucleotide binding	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.87115.2.S1_at	AW756094	-	-	3e-18	At3g60860	guanine nucleotide exchange family protein	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.85830.1.S1_at	AW569216	-	-	3e-26	At1g23230	unknown protein	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.34127.1.S1_at	AI441630	-	-	3e+0	At5g49525	unknown protein	S.X.	H.G.	Please select
0.36	50.8	Gma.1659.2.S1_a_at	AW704429	-	-	7e-3	At3g07100	protein transport protein Sec24, putative	S.X.	H.G.	Please select
0.29	39.0	Gma.1593.1.S1_at	BE658200	-	-	1e-2	At2g33490	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.0	97.2	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
4.0	97.2	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.8	97.0	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.6	96.7	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.4	96.4	GSM293414	96_1554.1Q.R120P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM292575	85_C136.1H.R9H2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM292900	74_1488.1L.R294P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM309528	storage protein suppression expt, control tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.0	95.6	GSM292221	15_C026.1B.SLB2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM293335	24_1568.1Q.R156P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	0	1328	Gma.11249.1.S1_at	AW348404	-	-	3e-47	At3g50590	nucleotide binding	C.G.	S.X.	Please select
0.53	0	1328	Gma.11249.1.S1_a_at	AW348404	-	-	3e-47	At3g50590	nucleotide binding	C.G.	S.X.	Please select
0.61	0	801	Gma.11249.2.S1_at	BE611552	-	-	2e-12	At3g50590	nucleotide binding	C.G.	S.X.	Please select
0.02	1e-1	38	GmaAffx.92491.1.S1_s_at	CF808255	chalcone synthase 1	-	5e-17	At5g13930	TT4 (TRANSPARENT TESTA 4)	C.G.	S.X.	Please select
0.02	1e-1	38	Gma.17605.1.S1_at	BI968208	chalcone synthase 1	-	9e-16	At5g13930	TT4 (TRANSPARENT TESTA 4)	C.G.	S.X.	Please select
0.01	5e-1	36	PsAffx.C6000124_at	PsAffx.C6000124	-	-	4e+0	At5g27860	unknown protein	C.G.	S.X.	Please select
0.01	5e-1	36	PsAffx.C54000059_at	PsAffx.C54000059	-	-	3e-2	At1g12830	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	36	GmaAffx.36335.1.S1_at	BU550738	-	-	1e-8	At2g25100	ribonuclease HII family protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C76000061_at	PsAffx.C76000061	-	-	2e+0	At3g51090	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	9e-45	180	Arabidopsis thaliana	At3g50590	824223	nucleotide binding	F:nucleotide binding;P:biological_process unknown;C:plasma membrane;MBFOPV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-1	34	Hordeum vulgare	HVSMEk0022L04r2_s_at	HVSMEk0022L04r2	-	-	9e-1	At2g28800	ALB3 (ALBINO 3)	C.G.	S.X.	Please select
0.14	7e-7	56	Oryza sativa	Os09g0408000	AK059658.1	-	Conserved hypothetical protein	2e-11	At3g50590	nucleotide binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.42	1e-57	224	Populus trichocarpa	Ptp.6322.2.A1_a_at	CV241840	-	-	4e-1	At1g61810	BGLU45 (BETA-GLUCOSIDASE 45)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	6e+0	32	Triticum aestivum	Ta.6698.2.S1_a_at	CA682866	-	-	4e+0	At4g31150	endonuclease V family protein	C.G.	S.X.	Please select
0.20	1e-16	85	Vitis vinifera	1608593_at	CB981729	hypothetical protein LOC100254837	-	1e+0	At2g27340	-	C.G.	S.X.	Please select
0.03	9e+0	30	Zea mays	Zm.9077.1.A1_at	BM266412	-	-	1e+0	At5g43770	proline-rich family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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