CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.92300.1.S1_s_at

Gene name Chorismate synthase

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 88.9 GmaAffx.92300.1.S1_s_at CF807658 Chorismate synthase - 5e-50 At1g48850 EMB1144 (embryo defective 1144) S.X. H.G.
0.67 86.1 Gma.4269.3.S1_a_at CA784404 - - 3e-19 At1g27450 APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) S.X. H.G.
0.60 80.7 Gma.4269.2.S1_a_at BU083811 - - 8e-17 At1g27450 APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) S.X. H.G.
0.38 53.3 GmaAffx.88920.1.S1_s_at CK605763 - - 3e-60 At1g65930 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative S.X. H.G.
0.36 50.8 GmaAffx.86175.2.S1_at BI471498 - - 2e-2 At1g09490 cinnamyl-alcohol dehydrogenase family / CAD family S.X. H.G.
0.33 46.1 Gma.1288.2.S1_a_at BE473596 - - 2e-1 At2g22250 aminotransferase class I and II family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.7 98.7 GSM171686 30_V.F.I.3, Experimental replicate V GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.9 98.5 GSM171699 3_W.I.I.3, Experimental replicate W GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.5 98.3 GSM171630 18_Z.I.I.3, Experimental replicate Z GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.4 98.2 GSM171659 24_W.F.I.3, Experimental replicate W GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.4 98.2 GSM171666 26_V.E.I.3, Experimental replicate V GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.3 98.2 GSM171642 20_V.C.I.3, Experimental replicate V GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.1 98.1 GSM171697 32_Z.B.I.3, Experimental replicate Z GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.0 98.0 GSM171616 14_Y.F.I.3, Experimental replicate Y GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.0 98.0 GSM293963 1_2273.2F.R139U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0 98.0 GSM293967 23_2261.2F.R205U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.67 0 726 Gma.4310.2.S1_s_at BQ473919 Chorismate synthase - 3e-26 At1g48850 EMB1144 (embryo defective 1144) C.G. S.X.
0.67 0 726 Gma.4310.2.S1_at BQ473919 chorismate synthase - 3e-26 At1g48850 EMB1144 (embryo defective 1144) C.G. S.X.
0.30 3e-135 482 Gma.4310.1.S1_at BE822674 chorismate synthase - 3e-58 At1g48850 EMB1144 (embryo defective 1144) C.G. S.X.
0.02 1e-1 38 Gma.9081.1.S1_at CA803057 - - 2e-22 At5g10160 beta-hydroxyacyl-ACP dehydratase, putative C.G. S.X.
0.03 2e+0 34 PsAffx.psHB001xP16f_at PsAffx.psHB001xP16f - - 4e+0 At4g19830 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein C.G. S.X.
0.02 2e+0 34 PsAffx.C135000028_at PsAffx.C135000028 - - 5e-1 At5g07600 oleosin / glycine-rich protein C.G. S.X.
0.01 2e+0 34 HgAffx.21123.2.S1_at CK349073 - - 4e+0 At3g42310 unknown protein C.G. S.X.
0.01 2e+0 34 Gma.17610.1.S1_at U50075.1 lipoxygenase L-5 - 1e-7 At1g55020 LOX1 C.G. S.X.
0.01 2e+0 34 Gma.17610.1.S1_x_at U50075.1 lipoxygenase L-5 - 1e-7 At1g55020 LOX1 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 5e-50 198 Arabidopsis thaliana At1g48850 841307 EMB1144 (embryo defective 1144) F:chorismate synthase activity;P:embryonic development ending in seed dormancy, aromatic amino acid family biosynthetic process;C:nucleolus, chloroplast;OBAFPM - - - C.G. S.X.
0.03 8e-1 34 Hordeum vulgare Contig25822_at Contig25822 - - 3e-1 At5g22280 unknown protein C.G. S.X.
0.63 6e-88 325 Oryza sativa Os.49758.1.S1_at - - - 0 C.G. S.X.
0.53 4e-82 305 Populus trichocarpa Ptp.1640.2.S1_s_at CV256756 chorismate synthase /// chorismate synthase - 6e-93 At1g48850 EMB1144 (embryo defective 1144) C.G. S.X.
0.09 4e-7 56 Triticum aestivum Ta.4852.1.S1_at CK198834 - - 4e-12 At1g48850 EMB1144 (embryo defective 1144) C.G. S.X.
0.28 8e-46 182 Vitis vinifera 1607321_at CB973341 hypothetical protein LOC100241015 - 1e-36 At1g48850 EMB1144 (embryo defective 1144) C.G. S.X.
0.10 3e-6 52 Zea mays Zm.13401.1.A1_at AF457954.1 - - 4e-19 At1g48850 EMB1144 (embryo defective 1144) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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