Gene omics information

Query gene ID	GmaAffx.92184.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	92.5	GmaAffx.92184.1.S1_s_at	CF807909	-	-	3e-1	At2g16900	-	S.X.	H.G.	Please select
0.83	92.5	GmaAffx.93103.1.S1_s_at	CF808828	-	-	5e-3	At4g15236	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	S.X.	H.G.	Please select
0.73	88.9	Gma.4927.1.S1_at	BG510284	-	-	7e-3	At4g15236	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	S.X.	H.G.	Please select
0.67	86.1	GmaAffx.90026.1.S1_s_at	CF805751	-	-	5e-18	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	S.X.	H.G.	Please select
0.61	81.8	Gma.11238.1.S1_at	BQ454110	-	-	3e-121	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	S.X.	H.G.	Please select
0.55	76.3	GmaAffx.90789.1.S1_s_at	CF806514	-	-	1e+0	At5g58990	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.1	98.8	GSM244909	3_VP9.I3L2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
5.9	98.5	GSM294272	26_2427.2I.R297L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.8	98.4	GSM292793	53_C197.1K.R9K3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.7	98.4	GSM293408	90_C079.1Q.R9Q2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.7	98.4	GSM293965	21_2245.2F.R272L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6	98.3	GSM292845	24_1445.1L.R272L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.4	98.2	GSM292359	28_C099.1F.V7F2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.4	98.2	GSM294047	96_3095.2F.R9F1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.3	98.2	GSM293546	60_2021.2A.R275L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.3	98.2	GSM293494	13_2013.2A.R203L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	0	900	Gma.5709.1.S1_at	BG157556	-	-	3e+0	At5g58990	unknown protein	C.G.	S.X.	Please select
0.18	7e-21	101	GmaAffx.91459.1.S1_at	CF807184	-	-	2e+0	At3g44140	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	34	GmaAffx.56283.1.S1_at	BU761809	-	-	3e+0	At5g10680	calmodulin-binding protein-related	C.G.	S.X.	Please select
0.04	1e+0	34	Gma.13150.1.A1_at	CD411577	-	-	1e+0	At3g61900	auxin-responsive family protein	C.G.	S.X.	Please select
0.03	6e+0	32	PsAffx.psHB044xD04f_at	PsAffx.psHB044xD04f	-	-	6e-3	At4g24260	ATGH9A3 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A3)	C.G.	S.X.	Please select
0.03	6e+0	32	PsAffx.psHB044xJ22f_at	PsAffx.psHB044xJ22f	-	-	5e+0	At2g01670	atnudt17 (Arabidopsis thaliana Nudix hydrolase homolog 17)	C.G.	S.X.	Please select
0.02	6e+0	32	PsAffx.CL95Contig1_at	PsAffx.CL95Contig1	-	-	1e+1	At4g10380	NIP5	C.G.	S.X.	Please select
0.02	6e+0	32	PsAffx.CL2067Contig1_at	PsAffx.CL2067Contig1	-	-	2e-3	At5g01075	beta-galactosidase	C.G.	S.X.	Please select
0.03	6e+0	32	PsAffx.C99000036_at	PsAffx.C99000036	-	-	7e-2	At5g19190	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At2g16900	816192	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;POMVFBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-1	36	Hordeum vulgare	Contig15845_s_at	Contig15845	-	-	2e-2	At5g66400	RAB18 (RESPONSIVE TO ABA 18)	C.G.	S.X.	Please select
0.04	8e+0	32	Oryza sativa	OsAffx.830.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	9e-2	38	Populus trichocarpa	PtpAffx.115510.1.S1_s_at	CN519492	hypothetical protein	-	1e-1	At2g20790	protein binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	TaAffx.13367.1.A1_at	BG905329	-	-	7e-1	At2g20784	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1621797_at	AY427169.1	-	-	2e-2	At1g36320	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.8655.1.A1_at	BM075075	-	-	5e+0	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage