CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.91918.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 GmaAffx.91918.1.S1_at CF807643 - - 4e-149 At1g56070 LOS1 S.X. H.G.
0.71 87.8 GmaAffx.93348.1.S1_s_at CF809073 - - 3e-59 At1g56070 LOS1 S.X. H.G.
0.67 86.1 Gma.978.2.S1_at BE610753 - - 2e-35 At1g09620 ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding S.X. H.G.
0.67 86.1 GmaAffx.93348.1.S1_x_at CF809073 - - 3e-59 At1g56070 LOS1 S.X. H.G.
0.61 81.8 GmaAffx.93348.1.S1_at CF809073 - - 3e-59 At1g56070 LOS1 S.X. H.G.
0.50 71.7 GmaAffx.60624.1.S1_at AI440855 - - 4e+0 At5g09450 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.0 98.8 GSM309527 storage protein suppression expt, control tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
6.9 98.8 GSM309528 storage protein suppression expt, control tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
6.7 98.7 GSM309531 storage protein suppression expt, RNAi biol rep2, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
5.6 98.3 GSM309530 storage protein suppression expt, RNAi biol rep2, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
5.3 98.2 GSM309529 storage protein suppression expt, RNAi biol rep1, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
4.9 98.0 GSM309557 storage protein suppression expt, RNAi biol rep1, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
3.3 96.2 GSM244898 38_CON.M1W4.CEL, Experimental replicate 4 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.0 95.6 GSM309341 Wild type 1 GSE12300 Suppression of oleosin in soybean cotyledon
2.9 95.4 GSM292768 30_C198.1K.R9K3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9 95.4 GSM294075 31_3126.2G.R9G3P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 0 1298 Gma.10782.1.S1_at CD410674 - - 0 At1g56070 LOS1 C.G. S.X.
0.39 0 1298 Gma.10782.1.S1_x_at CD410674 - - 0 At1g56070 LOS1 C.G. S.X.
0.39 0 1298 Gma.10782.1.S1_s_at CD410674 - - 0 At1g56070 LOS1 C.G. S.X.
0.40 2e-93 343 GmaAffx.93348.1.S1_at CF809073 - - 3e-59 At1g56070 LOS1 C.G. S.X.
0.40 2e-93 343 GmaAffx.93348.1.S1_x_at CF809073 - - 3e-59 At1g56070 LOS1 C.G. S.X.
0.40 2e-93 343 GmaAffx.93348.1.S1_s_at CF809073 - - 3e-59 At1g56070 LOS1 C.G. S.X.
0.08 3e-8 59 PsAffx.CL1Contig42_at PsAffx.CL1Contig42 - - 1e-8 At1g56070 LOS1 C.G. S.X.
0.06 3e-8 59 PsAffx.C55000022_s_at PsAffx.C55000022 - - 6e-9 At1g56070 LOS1 C.G. S.X.
0.01 5e-1 36 PsAffx.C2000052_at PsAffx.C2000052 - - 2e+0 At1g20270 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 4e-149 527 Arabidopsis thaliana At1g56070 842058 LOS1 encodes a translation elongation factor 2-like protein that is involved in cold-induced translation. Mutations in this gene specifically blocks low temperature-induced transcription of cold-responsive genes but induces the expression of CBF genes and mutants carrying the recessive mutations fail to acclimate to cold and is freezing sensitive. - - - C.G. S.X.
0.43 2e-100 365 Hordeum vulgare Contig1003_at Contig1003 - - 0 At1g56070 LOS1 C.G. S.X.
0.33 1e-101 371 Oryza sativa Os02g0519900 AK100313.1 - Elongation factor EF-2 (Fragment) 0 At1g56070 LOS1 C.G. S.X.
0.43 2e-40 167 Populus trichocarpa PtpAffx.70975.1.S1_s_at CN517885 hypothetical protein - 2e-26 At1g56070 LOS1 C.G. S.X.
0.60 9e-70 264 Triticum aestivum Ta.5736.3.S1_at BJ244184 - - 1e-61 At1g56070 LOS1 C.G. S.X.
0.36 9e-98 355 Vitis vinifera 1615787_at BQ797242 similar to elongation factor 2 - 2e-168 At1g56070 LOS1 C.G. S.X.
0.28 3e-64 244 Zea mays Zm.14407.2.S1_at AW424519 hypothetical protein LOC100272648 - 3e-140 At1g56070 LOS1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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