Gene omics information

Query gene ID	GmaAffx.91659.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.97	99.8	GmaAffx.91659.1.S1_s_at	CF807384	-	-	5e-29	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	S.X.	H.G.	Please select
0.46	65.5	GmaAffx.85246.2.S1_at	BM954924	-	-	2e-9	At5g14250	COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13)	S.X.	H.G.	Please select
0.46	65.5	GmaAffx.68425.1.S1_at	BI425905	-	-	1e-35	At3g57650	LPAT2	S.X.	H.G.	Please select
0.45	63.9	GmaAffx.87598.1.S1_at	BM524947	-	-	8e-1	At2g13125	unknown protein	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.63282.1.S1_at	BG042411	-	-	2e-10	At5g40490	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.44	63.3	Gma.16282.4.S1_a_at	AW234404	-	-	1e-20	At1g43190	polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative	S.X.	H.G.	Please select
0.41	58.1	GmaAffx.78964.1.S1_at	AW201648	-	-	1e-3	At3g52660	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.88112.1.S1_at	AW185398	-	-	2e-9	At3g09180	unknown protein	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.39028.1.S1_at	BF598446	-	-	4e-8	At4g26000	PEP (PEPPER)	S.X.	H.G.	Please select
0.40	57.1	Gma.9743.1.S1_at	CB063532	-	-	8e-8	At5g61970	signal recognition particle-related / SRP-related	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.9	98.0	GSM209594	resistant_12hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.4	96.4	GSM293772	18_2164.2D.R027P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM209596	resistant_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.2	96.0	GSM293419	10_C108.1R.R9R3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM294293	45_3162.2I.R9I3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
2.9	95.4	GSM293060	61_C034.1N.R9N3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM293594	25_2056.2B.R020P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM292959	38_C232.1M.R9M3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM294132	86_3112.2G.R9G1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	6e-5	48	Gma.1034.2.S1_a_at	CD390455	-	-	1e-11	At4g02430	pre-mRNA splicing factor, putative / SR1 protein, putative	C.G.	S.X.	Please select
0.06	6e-5	48	Gma.1034.2.S1_at	CD390455	-	-	1e-11	At4g02430	pre-mRNA splicing factor, putative / SR1 protein, putative	C.G.	S.X.	Please select
0.04	2e-4	46	Gma.2497.1.S1_at	CD396374	-	-	7e-46	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	C.G.	S.X.	Please select
0.02	2e-1	36	PsAffx.CL76Contig2_at	PsAffx.CL76Contig2	-	-	1e-2	At5g16570	GLN1	C.G.	S.X.	Please select
0.02	2e-1	36	GmaAffx.93489.1.A1_at	CF805737	-	-	3e+0	At4g31940	CYP82C4	C.G.	S.X.	Please select
0.02	2e-1	36	Gma.3136.1.S1_at	BG839241	-	-	4e+0	At4g31940	CYP82C4	C.G.	S.X.	Please select
0.02	2e-1	36	Gma.3136.1.S1_s_at	BG839241	-	-	4e+0	At4g31940	CYP82C4	C.G.	S.X.	Please select
0.04	2e-1	36	Gma.3136.2.A1_s_at	BG839435	-	-	1e+0	At2g21820	unknown protein	C.G.	S.X.	Please select
0.04	8e-1	34	PsAffx.CL914Contig1_at	PsAffx.CL914Contig1	-	-	5e+0	At1g09140	SF2/ASF-like splicing modulator (SRP30)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	5e-29	127	Arabidopsis thaliana	At3g49430	824105	SRp34a (Ser/Arg-rich protein 34a)	F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA splicing;C:nucleolus;MOPFBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	1e-9	61	Hordeum vulgare	Contig4304_at	Contig4304	-	-	3e-12	At1g09140	SF2/ASF-like splicing modulator (SRP30)	C.G.	S.X.	Please select
0.09	3e-7	56	Oryza sativa	Os05g0364600	AK071503.1	-	SF2/ASF-like splicing modulator Srp30, variant 1	2e-13	At4g02430	pre-mRNA splicing factor, putative / SR1 protein, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.31	8e-69	260	Populus trichocarpa	PtpAffx.5221.1.A1_at	CV260210	hypothetical protein	-	3e-43	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	7e-7	54	Triticum aestivum	Ta.3227.2.S1_x_at	CK198384	alternative splicing regulator	-	1e-17	At1g09140	SF2/ASF-like splicing modulator (SRP30)	C.G.	S.X.	Please select
0.10	3e-3	40	Vitis vinifera	1616840_at	CF608637	hypothetical protein LOC100255499	-	9e-15	At1g09140	SF2/ASF-like splicing modulator (SRP30)	C.G.	S.X.	Please select
0.16	7e-8	56	Zea mays	Zm.3977.1.A1_at	CF627326	pre-mRNA-splicing factor SF2	-	2e-16	At1g09140	SF2/ASF-like splicing modulator (SRP30)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage