CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.91578.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.9 GmaAffx.91578.1.S1_at CF807303 - - 6e-74 At3g54190 - S.X. H.G.
0.50 71.7 GmaAffx.91578.1.S1_x_at CF807303 - - 6e-74 At3g54190 - S.X. H.G.
0.40 57.1 GmaAffx.91578.1.S1_s_at CF807303 - - 6e-74 At3g54190 - S.X. H.G.
0.38 53.3 GmaAffx.75978.2.S1_x_at AI900126 - - 8e-1 At3g21420 oxidoreductase, 2OG-Fe(II) oxygenase family protein S.X. H.G.
0.29 39.0 GmaAffx.82510.1.S1_at BG239314 - - 1e-1 At5g37820 NIP4 S.X. H.G.
0.09 12.0 GmaAffx.75978.3.S1_s_at CA937876 - - 2e-35 At1g36730 eukaryotic translation initiation factor 5, putative / eIF-5, putative S.X. H.G.
0.05 8.0 Gma.2607.2.S1_at BF595916 - - 9e-1 At5g47230 ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5) S.X. H.G.
0.02 4.5 Gma.15133.2.S1_a_at BE803230 - - 5e-1 At4g13860 glycine-rich RNA-binding protein, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.6 98.9 GSM209591 mock_0hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.4 98.6 GSM294132 86_3112.2G.R9G1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.3 98.6 GSM209594 resistant_12hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.0 98.0 GSM292575 85_C136.1H.R9H2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0 98.0 GSM293060 61_C034.1N.R9N3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8 97.9 GSM292893 68_C210.1L.R9L2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7 97.8 GSM308556 Mature Soybean (Glycine max) pollen grains replicate 1 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
4.6 97.7 GSM292675 25_1402.1J.R249P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6 97.7 GSM292890 65_C202.1L.R9L1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6 97.7 GSM293789 33_3058.2D.R9D1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1522 GmaAffx.91578.1.S1_s_at CF807303 - - 6e-74 At3g54190 - C.G. S.X.
1.00 0 1522 GmaAffx.91578.1.S1_x_at CF807303 - - 6e-74 At3g54190 - C.G. S.X.
0.56 0 710 Gma.10781.1.S1_a_at AW101008 - - 7e-29 At2g38630 - C.G. S.X.
0.36 2e-151 535 Gma.16657.2.S1_at AW756079 - - 7e-18 At3g54190 - C.G. S.X.
0.04 9e-9 61 GmaAffx.90950.1.S1_at CF806675 - - 9e-18 At2g38630 - C.G. S.X.
0.04 4e-5 50 GmaAffx.86503.1.S1_at BG157670 - - 3e+0 At5g13890 unknown protein C.G. S.X.
0.01 5e-1 36 PsAffx.C358000001_at PsAffx.C358000001 - - 7e-1 At4g11300 unknown protein C.G. S.X.
0.01 5e-1 36 PsAffx.C165000019_at PsAffx.C165000019 - - 3e+0 At5g49940 NFU2 (NIFU-LIKE PROTEIN 2) C.G. S.X.
0.02 5e-1 36 GmaAffx.84643.1.S1_at BU545213 - - 1e-19 At5g61580 PFK4 (PHOSPHOFRUCTOKINASE 4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.50 6e-74 278 Arabidopsis thaliana At3g54190 824586 - F:molecular_function unknown;P:biological_process unknown;C:unknown;PO - - - C.G. S.X.
0.21 9e-16 83 Hordeum vulgare Contig14966_at Contig14966 - - 7e-23 At3g54190 - C.G. S.X.
0.24 3e-25 117 Oryza sativa Os05g0482600 AK120343.1 - WD40-like domain containing protein 3e-28 At3g54190 - C.G. S.X.
0.62 2e-142 506 Populus trichocarpa PtpAffx.211268.1.S1_at pmrna22106 hypothetical protein - 5e-66 At3g54190 - C.G. S.X.
0.13 6e-3 42 Triticum aestivum TaAffx.122624.2.S1_at BG909421 - - 1e-21 At3g54190 - C.G. S.X.
0.14 4e-32 137 Vitis vinifera 1617845_at CD800649 hypothetical protein LOC100263968 - 4e-35 At2g38630 - C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.1078.1.S1_at AI948227 - - 3e-2 At3g22845 emp24/gp25L/p24 protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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