Gene omics information

Query gene ID	GmaAffx.91573.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.3	GmaAffx.91573.1.S1_at	CF807298	-	-	5e-9	At3g05200	ATL6	S.X.	H.G.	Please select
0.73	88.9	GmaAffx.70634.1.S1_s_at	BQ079384	-	-	4e-9	At3g05200	ATL6	S.X.	H.G.	Please select
0.67	86.1	GmaAffx.70634.1.S1_at	BQ079384	-	-	4e-9	At3g05200	ATL6	S.X.	H.G.	Please select
0.50	71.7	Gma.2352.1.S1_at	AI443511	-	-	1e+0	At2g21100	disease resistance-responsive protein-related / dirigent protein-related	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.50095.4.S1_s_at	CA802210	-	-	8e-1	At1g67330	unknown protein	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.70823.2.S1_at	BU765789	-	-	2e+0	At4g10860	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.0	99.0	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.5	98.7	GSM293553	67_3017.2A.R9A3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.7	98.4	GSM294344	91_2417.2I.R236U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.7	98.4	GSM292240	49_C033.1B.R9B3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6	98.3	GSM292254	6_C033.1B.R9B3U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2	98.1	GSM292341	8_C089.1E.R9E3U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM292208	70_C004.1A.R9A1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM293577	9_3009.2A.R9A2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM293408	90_C079.1Q.R9Q2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM294272	26_2427.2I.R297L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.75	0	739	GmaAffx.70634.1.S1_at	BQ079384	-	-	4e-9	At3g05200	ATL6	C.G.	S.X.	Please select
0.75	0	739	GmaAffx.70634.1.S1_s_at	BQ079384	-	-	4e-9	At3g05200	ATL6	C.G.	S.X.	Please select
0.37	1e-38	161	GmaAffx.90914.1.S1_at	CF806639	-	-	2e-6	At3g05200	ATL6	C.G.	S.X.	Please select
0.24	5e-22	105	GmaAffx.28563.1.S1_at	BQ094213	-	-	9e-7	At1g22500	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	3e-2	40	Gma.1638.1.S1_at	AW569355	-	-	2e-3	At1g23149	CPuORF29 (Conserved peptide upstream open reading frame 29)	C.G.	S.X.	Please select
0.04	4e-1	36	PsAffx.CL628Contig1_at	PsAffx.CL628Contig1	-	-	1e+0	At5g57750	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	4e-1	36	HgAffx.18907.1.S1_at	CA940273	-	-	4e+0	At4g21010	transcription initiation factor-related	C.G.	S.X.	Please select
0.03	4e-1	36	HgAffx.11077.2.A1_at	CK349035	-	-	4e+0	At1g14700	PAP3 (PURPLE ACID PHOSPHATASE 3)	C.G.	S.X.	Please select
0.04	4e-1	36	HgAffx.11077.1.S1_at	CK350762	-	-	9e-1	At2g16780	MSI2 (MULTICOPY SUPPRESSOR OF IRA1 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	5e-9	61	Arabidopsis thaliana	At3g05200	819684	ATL6	Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	32	Hordeum vulgare	HM08C24r_at	HM08C24r	-	-	3e+0	At5g67490	unknown protein	C.G.	S.X.	Please select
0.13	2e-16	87	Oryza sativa	OsAffx.6439.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	6e-3	42	Populus trichocarpa	PtpAffx.118885.1.S1_s_at	DN502040	hypothetical protein	-	4e-13	At1g72200	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	TaAffx.37249.1.S1_at	BJ290506	-	-	7e-1	At1g06380	ribosomal protein-related	C.G.	S.X.	Please select
0.03	3e-1	34	Vitis vinifera	1620268_at	CF517017	-	-	2e-1	At5g61630	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Zea mays	Zm.2135.1.S1_at	CD436684	hypothetical protein LOC100217069	-	4e-26	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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