CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.91420.1.S1_s_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 GmaAffx.91420.1.S1_s_at CF807145 - - 4e-3 At4g13390 proline-rich extensin-like family protein S.X. H.G.
0.38 53.3 GmaAffx.18316.1.S1_at AW351166 - - 3e-1 At5g62210 embryo-specific protein-related S.X. H.G.
0.15 18.7 GmaAffx.87561.1.S1_x_at BQ473189 - - 4e-3 At1g26250 proline-rich extensin, putative S.X. H.G.
0.01 3.4 GmaAffx.30877.1.S1_at BE822745 - - 1e+0 At1g59640 ZCW32 S.X. H.G.
0.01 3.4 GmaAffx.83815.1.S1_s_at BG404904 - - 1e+0 At1g04330 unknown protein S.X. H.G.
0.01 3.4 GmaAffx.90612.1.S1_at CF806337 - - 2e-14 At5g63470 NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
105.3 100.0 GSM292923 95_1465.1L.R283L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
47.5 99.9 GSM294268 23_2428.2I.R297P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
28.9 99.8 GSM292838 18_C211.1L.SLL3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
26.8 99.8 GSM292230 28_1045.1B.R025L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
26.5 99.8 GSM292922 94_1463.1L.R282U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
25.2 99.8 GSM292905 79_C211.1L.SLL3U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
18.5 99.7 GSM292910 83_1471.1L.R286L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
14.2 99.6 GSM293211 91_1151.1O.R095L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.9 99.5 GSM244782 11_CON.I2W3.CEL, Experimental replicate 3 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
12.0 99.4 GSM308556 Mature Soybean (Glycine max) pollen grains replicate 1 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 4e-127 454 GmaAffx.90874.1.S1_s_at CF806599 - - 2e-2 At5g35190 proline-rich extensin-like family protein C.G. S.X.
0.16 2e-27 123 GmaAffx.90800.1.S1_x_at CF806525 - - 2e-2 At5g06630 proline-rich extensin-like family protein C.G. S.X.
0.19 2e-27 123 GmaAffx.90749.1.S1_x_at CF806474 - - 3e-4 At2g43150 proline-rich extensin-like family protein C.G. S.X.
0.24 8e-27 121 GmaAffx.87561.1.S1_x_at BQ473189 - - 4e-3 At1g26250 proline-rich extensin, putative C.G. S.X.
0.18 4e-22 105 GmaAffx.46127.1.S1_x_at BM093461 - - 3e-3 At1g26250 proline-rich extensin, putative C.G. S.X.
0.22 1e-16 87 Gma.4346.1.S1_s_at AW309773 - - 3e-2 At3g54590 ATHRGP1 (HYDROXYPROLINE-RICH GLYCOPROTEIN) C.G. S.X.
0.22 6e-12 71 GmaAffx.34785.5.S1_s_at BQ453262 - - 6e-4 At2g43150 proline-rich extensin-like family protein C.G. S.X.
0.19 2e-11 69 GmaAffx.93270.1.S1_x_at CF808995 - - 2e-5 At1g26240 proline-rich extensin-like family protein C.G. S.X.
0.14 2e-11 69 GmaAffx.65716.1.A1_x_at CA853286 - - 5e-5 At5g35190 proline-rich extensin-like family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 4e-3 42 Arabidopsis thaliana At4g13390 826970 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA - - - C.G. S.X.
0.09 3e-2 38 Hordeum vulgare Contig14167_at Contig14167 - - 2e-3 At3g14480 glycine/proline-rich protein C.G. S.X.
0.06 1e-1 38 Oryza sativa OsAffx.7680.1.S1_at - - - 0 C.G. S.X.
0.34 9e-5 48 Populus trichocarpa PtpAffx.200833.1.S1_x_at pmrna1624 hypothetical protein - 1e-3 At1g26250 proline-rich extensin, putative C.G. S.X.
0.07 7e-2 38 Triticum aestivum TaAffx.85551.1.S1_at CA621796 - - 3e-1 At5g58412 - C.G. S.X.
0.06 5e-3 40 Vitis vinifera 1611973_at BQ793499 hypothetical protein LOC100259389 - 1e-1 At1g15840 unknown protein C.G. S.X.
0.03 3e-2 38 Zea mays Zm.6329.1.A1_at AI834129 - - 1e-1 At5g24313 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage