CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.91054.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.9 GmaAffx.91054.1.S1_at CF806779 - - 2e-8 At1g04230 unknown protein S.X. H.G.
0.73 88.9 GmaAffx.82078.1.S1_at BI424683 - - 1e-27 At3g26420 ATRZ-1A S.X. H.G.
0.67 86.1 GmaAffx.92769.1.S1_at CF808494 - - 1e-75 At3g19760 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative S.X. H.G.
0.55 76.3 GmaAffx.92769.1.S1_s_at CF808494 - - 1e-75 At3g19760 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative S.X. H.G.
0.47 66.6 GmaAffx.33620.2.S1_at BM731339 - - 2e-14 At1g51730 RWD domain-containing protein S.X. H.G.
0.46 65.5 GmaAffx.93491.1.S1_s_at CF809216 - - 3e-1 At4g38280 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.1 95.8 GSM293060 61_C034.1N.R9N3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM292959 38_C232.1M.R9M3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM258498 Soybean shoot apical meristem, 2 short-day treatment GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.0 95.6 GSM294132 86_3112.2G.R9G1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0 95.6 GSM258502 Vegetative shoot apical meristem, replicate B GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
2.9 95.4 GSM292158 10_C010.1A.R9A2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8 95.1 GSM294571 41_3212.2L.R9L3P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8 95.1 GSM258499 Soybean shoot apical meristem, 4 short-day treatment GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
2.8 95.1 GSM293088 87_1090.1N.R055P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8 95.1 GSM292455 55_C112.1G.R9G1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.98 0 1384 GmaAffx.91054.1.S1_s_at CF806779 - - 2e-8 At1g04230 unknown protein C.G. S.X.
0.03 1e-4 48 GmaAffx.93035.1.S1_at CF808760 - - 3e-1 At1g62770 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.03 1e-4 48 GmaAffx.84929.1.S1_at AI900039 4-hydroxyphenylpyruvate dioxygenase - 3e-4 At1g06570 PDS1 (PHYTOENE DESATURATION 1) C.G. S.X.
0.03 1e-4 48 GmaAffx.4968.1.S1_at BI967691 - - 3e-1 At1g52140 unknown protein C.G. S.X.
0.03 1e-4 48 Gma.576.1.S1_at BM732317 - - 2e+0 At5g35470 unknown protein C.G. S.X.
0.03 1e-4 48 Gma.576.1.S1_s_at BM732317 - - 2e+0 At5g35470 unknown protein C.G. S.X.
0.03 2e-3 44 GmaAffx.6579.1.S1_at CD405796 - - 3e-1 At1g51090 heavy-metal-associated domain-containing protein C.G. S.X.
0.02 8e-3 42 PsAffx.C118000027_at PsAffx.C118000027 - - 6e-2 At3g50550 unknown protein C.G. S.X.
0.03 8e-3 42 Gma.3762.2.S1_at BG551036 - - 1e-3 At3g17520 late embryogenesis abundant domain-containing protein / LEA domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 2e-8 59 Arabidopsis thaliana At1g04230 839575 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBV - - - C.G. S.X.
0.03 2e-4 46 Hordeum vulgare Contig14709_at Contig14709 - - 1e-7 At3g15095 unknown protein C.G. S.X.
0.05 2e-4 48 Oryza sativa OsAffx.15879.1.A1_at - - - 0 C.G. S.X.
0.29 6e-19 95 Populus trichocarpa PtpAffx.208181.1.S1_at pmrna16274 hypothetical protein - 5e-19 At5g43720 unknown protein C.G. S.X.
0.04 1e-1 38 Triticum aestivum TaAffx.84990.1.S1_at CA626533 - - 2e+1 At3g62990 unknown protein C.G. S.X.
0.03 3e-2 38 Vitis vinifera 1621837_at CB349507 - - 4e+0 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.03 2e-1 36 Zea mays Zm.8561.2.A1_a_at BM332166 hypothetical protein LOC100277438 - 4e+0 At4g05070 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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