CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.90950.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.72 88.1 GmaAffx.90950.1.S1_at CF806675 - - 9e-18 At2g38630 - S.X. H.G.
0.43 60.6 GmaAffx.2763.1.S1_at BU550943 - - 5e+0 At5g67600 unknown protein S.X. H.G.
0.43 60.6 GmaAffx.14834.1.S1_at AW350241 - - 1e-3 At5g51340 unknown protein S.X. H.G.
0.43 60.6 GmaAffx.10720.1.S1_at BU765494 - - 3e-5 At3g06170 TMS membrane family protein / tumour differentially expressed (TDE) family protein S.X. H.G.
0.39 54.5 Gma.6824.2.S1_at BE661743 - - 6e-4 At5g32440 - S.X. H.G.
0.37 51.7 GmaAffx.661.1.S1_at BI969786 - - 2e+0 At1g67080 ABA4 (abscisic acid (ABA)-deficient 4) S.X. H.G.
0.37 51.7 Gma.3921.2.S1_x_at BG790883 - - 1e-27 At1g80950 phospholipid/glycerol acyltransferase family protein S.X. H.G.
0.34 47.2 GmaAffx.644.1.S1_at BE659523 - - 4e-60 At2g32980 unknown protein S.X. H.G.
0.34 47.2 GmaAffx.7280.1.S1_at AW459314 - - 8e-9 At4g34040 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.33 46.1 Gma.8066.1.A1_at BQ611504 - - 1e-1 At1g54170 CID3 (CTC-Interacting Domain 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.9 99.0 GSM293126 3_C038.1O.R9O1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6 97.7 GSM293105 20_C054.1O.R9O3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4 97.6 GSM294075 31_3126.2G.R9G3P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3 97.5 GSM293060 61_C034.1N.R9N3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3 97.5 GSM293789 33_3058.2D.R9D1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2 97.4 GSM293112 27_C047.1O.R9O2U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1 97.3 GSM294197 4_3138.2H.R9H2P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1 97.3 GSM294571 41_3212.2L.R9L3P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0 97.2 GSM294061 19_2292.2G.R251P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0 97.2 GSM292258 78_C034.1B.R9B3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.32 2e-96 353 Gma.10781.1.S1_a_at AW101008 - - 7e-29 At2g38630 - C.G. S.X.
0.29 1e-30 135 Gma.10781.2.A1_a_at BU547846 - - 5e-9 At3g54190 - C.G. S.X.
0.33 2e-29 131 GmaAffx.42903.1.S1_at CA801699 - - 8e-29 At2g38630 - C.G. S.X.
0.04 1e-8 61 GmaAffx.91578.1.S1_s_at CF807303 - - 6e-74 At3g54190 - C.G. S.X.
0.04 1e-8 61 GmaAffx.91578.1.S1_at CF807303 - - 6e-74 At3g54190 - C.G. S.X.
0.04 1e-8 61 GmaAffx.91578.1.S1_x_at CF807303 - - 6e-74 At3g54190 - C.G. S.X.
0.01 4e-2 40 PsAffx.C71000071_at PsAffx.C71000071 - - 5e-2 At2g20840 secretory carrier membrane protein (SCAMP) family protein C.G. S.X.
0.03 4e-2 40 GmaAffx.6253.2.S1_at BI893301 - - 3e-6 At5g43900 MYA2 (ARABIDOPSIS MYOSIN 2) C.G. S.X.
0.02 7e-1 36 HgAffx.13633.1.S1_at CD748017 - - 2e+0 At5g60670 60S ribosomal protein L12 (RPL12C) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 9e-18 91 Arabidopsis thaliana At2g38630 818445 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO - - - C.G. S.X.
0.08 3e-19 95 Hordeum vulgare Contig3161_at Contig3161 - - 3e-19 At3g54190 - C.G. S.X.
0.10 2e-5 52 Oryza sativa Os01g0817800 AK073827.1 - WD40-like domain containing protein 1e-18 At3g54190 - C.G. S.X.
0.30 4e-61 236 Populus trichocarpa PtpAffx.211268.1.S1_at pmrna22106 hypothetical protein - 5e-66 At3g54190 - C.G. S.X.
0.08 5e-4 46 Triticum aestivum Ta.26748.1.S1_at CD491037 - - 4e-1 At2g38630 - C.G. S.X.
0.18 3e-55 214 Vitis vinifera 1617845_at CD800649 hypothetical protein LOC100263968 - 4e-35 At2g38630 - C.G. S.X.
0.15 5e-2 38 Zea mays Zm.3436.1.A1_at AI964659 hypothetical protein LOC100217002 - 1e-20 At3g54190 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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