Gene omics information

Query gene ID	GmaAffx.90764.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.90764.1.S1_s_at	CF805757	-	-	8e-42	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	S.X.	H.G.	Please select
0.83	92.5	GmaAffx.90764.1.S1_at	CF805757	-	-	8e-42	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	S.X.	H.G.	Please select
0.59	79.5	GmaAffx.93082.1.S1_at	CF808807	-	-	2e-14	At1g48860	3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative	S.X.	H.G.	Please select
0.40	57.1	Gma.10326.1.S1_s_at	CD414575	-	-	6e-60	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	S.X.	H.G.	Please select
0.27	35.7	Gma.15492.1.S1_s_at	AF276302.1	chalcone isomerase	-	2e+0	At1g52510	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please select
0.10	13.0	Gma.4269.3.S1_a_at	CA784404	-	-	3e-19	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.7	99.4	GSM171632	18_W.E.I.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
9.2	99.2	GSM171666	26_V.E.I.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
8.9	99.2	GSM171686	30_V.F.I.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
8.3	99.1	GSM292524	39_C137.1H.SLH2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.1	99.0	GSM293745	78_3049.2C.SLC3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.8	99.0	GSM244891	36_SLO.I3L1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
7.1	98.8	GSM171630	18_Z.I.I.3, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.7	98.7	GSM171653	22_Z.E.I.3, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.6	98.7	GSM171616	14_Y.F.I.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.6	98.7	GSM171716	7_Y.I.I.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1144	GmaAffx.90764.1.S1_at	CF805757	-	-	8e-42	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	C.G.	S.X.	Please select
0.55	0	977	Gma.10326.1.S1_s_at	CD414575	-	-	6e-60	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	C.G.	S.X.	Please select
0.55	0	977	Gma.10326.1.S1_at	CD414575	-	-	6e-60	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	C.G.	S.X.	Please select
0.04	1e-1	38	GmaAffx.87042.2.S1_at	AW704742	-	-	5e-8	At4g12420	SKU5	C.G.	S.X.	Please select
0.03	1e-1	38	GmaAffx.16660.1.S1_at	BG509055	-	-	5e-7	At3g09090	DEX1 (DEFECTIVE IN EXINE FORMATION 1)	C.G.	S.X.	Please select
0.03	4e-1	36	GmaAffx.44071.2.S1_at	AW596021	-	-	9e-1	At5g06510	NF-YA10 (NUCLEAR FACTOR Y, SUBUNIT A10)	C.G.	S.X.	Please select
0.03	2e+0	34	PsAffx.CL1788Contig1_at	PsAffx.CL1788Contig1	-	-	1e+0	At5g18310	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	HgAffx.13966.1.S1_at	CB380065	-	-	8e-2	At2g45420	LBD18 (LOB DOMAIN-CONTAINING PROTEIN 18)	C.G.	S.X.	Please select
0.01	6e+0	32	PsAffx.C79000066_at	PsAffx.C79000066	-	-	3e+0	At5g35430	binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	8e-42	171	Arabidopsis thaliana	At2g45300	819138	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	encodes 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase involved in chorismate biosynthesis	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-2	38	Hordeum vulgare	HA12N13u_s_at	HA12N13u	-	-	5e-2	At1g54250	NRPB8A	C.G.	S.X.	Please select
0.36	2e-19	97	Oryza sativa	Os06g0133900	AB016765.1	-	5-enolpyruvylshikimate-3-phosphate synthase (EC2.5.1.19) (Fragment)	2e-35	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.42	4e-72	272	Populus trichocarpa	Ptp.2568.1.S1_s_at	CV246319	3-phosphoshikimate 1-carboxyvinyltransferase	-	7e-53	At1g48860	3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.29	6e-15	81	Triticum aestivum	Ta.12687.1.S1_at	BJ264243	5-enolpyruvylshikimate 3-phosphate synthase	-	2e-34	At1g48860	3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative	C.G.	S.X.	Please select
0.34	3e-51	200	Vitis vinifera	1621725_at	CF568814	-	-	9e-66	At1g48860	3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative	C.G.	S.X.	Please select
0.31	4e-20	97	Zea mays	Zm.98.1.S1_at	AY106729.1	3-phosphoshikimate 1-carboxyvinyltransferase	-	2e-48	At1g48860	3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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