Gene omics information

Query gene ID	GmaAffx.90753.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.8	GmaAffx.90753.1.S1_s_at	CF806478	-	-	1e+0	At5g49300	zinc finger (GATA type) family protein	S.X.	H.G.	Please select
0.50	71.7	Gma.1615.1.S1_at	CD410115	-	-	3e-2	At2g41410	calmodulin, putative	S.X.	H.G.	Please select
0.06	9.0	Gma.9135.2.S1_at	BF325042	-	-	5e-2	At2g02130	LCR68 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 68)	S.X.	H.G.	Please select
0.03	5.8	GmaAffx.90106.1.S1_s_at	CF805831	-	-	2e-35	At3g44110	ATJ3	S.X.	H.G.	Please select
0.02	4.5	Gma.6758.2.S1_at	BG155059	-	-	4e-7	At2g41420	proline-rich family protein	S.X.	H.G.	Please select
0.01	3.4	Gma.14624.2.S1_a_at	BI315846	-	-	9e-29	At1g07410	ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.2	99.8	GSM209596	resistant_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
12.6	99.5	GSM209597	susceptible_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
10.4	99.3	GSM209591	mock_0hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
9.3	99.2	GSM236910	Soybean_nonapicalmeristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
7.8	99.0	GSM209598	resistant_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.5	98.3	GSM292210	72-C002.1A.V7A1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.3	98.2	GSM292479	77_1248.1G.R154P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM292208	70_C004.1A.R9A1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4	97.6	GSM292412	16_1250.1G.R155P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM293329	19_1559.1Q.R134U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1011	GmaAffx.90753.1.S1_at	CF806478	-	-	1e+0	At5g49300	zinc finger (GATA type) family protein	C.G.	S.X.	Please select
1.00	0	1011	GmaAffx.90753.1.S1_x_at	CF806478	-	-	1e+0	At5g49300	zinc finger (GATA type) family protein	C.G.	S.X.	Please select
0.59	0	813	Gma.1615.1.S1_at	CD410115	-	-	3e-2	At2g41410	calmodulin, putative	C.G.	S.X.	Please select
0.58	5e-133	474	Gma.15250.1.S1_x_at	AI856228	-	-	4e-1	At3g10190	calmodulin, putative	C.G.	S.X.	Please select
0.58	5e-133	474	Gma.15250.1.S1_at	AI856228	-	-	4e-1	At3g10190	calmodulin, putative	C.G.	S.X.	Please select
0.04	9e-2	38	HgAffx.8939.1.S1_at	CB379562	-	-	1e+0	At5g07100	WRKY26	C.G.	S.X.	Please select
0.03	3e-1	36	PsAffx.CL1323Contig1_s_at	PsAffx.CL1323Contig1	-	-	1e+0	At2g19000	-	C.G.	S.X.	Please select
0.02	3e-1	36	PsAffx.C20000050_at	PsAffx.C20000050	-	-	5e-2	At2g42975	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	36	PsAffx.C127000017_at	PsAffx.C127000017	-	-	4e+0	At4g29658	PRA1.C (PRENYLATED RAB ACCEPTOR 1.C)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At5g49300	834990	zinc finger (GATA type) family protein	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-1	36	Hordeum vulgare	Contig14924_s_at	Contig14924	-	-	8e-1	At1g66560	WRKY64	C.G.	S.X.	Please select
0.04	1e-1	38	Oryza sativa	Os08g0254001	9636.m01547	-	-	1e-2	At5g11930	glutaredoxin family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e+0	34	Populus trichocarpa	PtpAffx.213024.1.S1_at	pmrna25472	hypothetical protein	-	1e+0	At3g19350	MPC (MATERNALLY EXPRESSED PAB C-TERMINAL)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	2e-2	40	Triticum aestivum	Ta.8740.3.S1_x_at	BJ248383	-	-	1e+0	At4g05030	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.03	3e-1	34	Vitis vinifera	1615722_s_at	CF604933	aquaporin-like	-	4e-28	At2g45960	PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B)	C.G.	S.X.	Please select
0.04	4e-1	34	Zea mays	ZmAffx.1062.1.A1_at	AI881950	-	-	3e+0	At4g12040	zinc finger (AN1-like) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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