CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.90745.1.S1_s_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 86.1 GmaAffx.90745.1.S1_s_at CF806470 - - 4e+0 At5g42235 Expressed protein S.X. H.G.
0.77 90.3 Gma.15087.1.S1_at BI968833 - - 5e+0 At1g01530 AGL28 (AGAMOUS-LIKE 28) S.X. H.G.
0.73 88.9 Gma.5142.1.S1_at BI971104 - - 2e+0 At5g27130 AGL39 (AGAMOUS LIKE 39) S.X. H.G.
0.48 67.7 Gma.1651.1.S1_at CD395076 - - 4e-1 At3g17880 ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN) S.X. H.G.
0.46 65.5 Gma.5237.1.S1_at BQ298220 - - 8e-10 At3g55960 NLI interacting factor (NIF) family protein S.X. H.G.
0.42 59.3 GmaAffx.22482.1.S1_x_at AW185059 - - 1e-28 At3g46460 UBC13 (ubiquitin-conjugating enzyme 13) S.X. H.G.
0.40 57.1 Gma.4995.2.S1_at AW830184 - - 3e-4 At5g13020 emsy N terminus domain-containing protein / ENT domain-containing protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.5 98.3 GSM292825 82_C184.1K.R9K1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3 97.5 GSM293718 53_2144.2C.R109P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0 97.2 GSM293616 45_3030.2B.R9B2P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9 97.1 GSM293500 19_2008.2A.R283P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8 97.0 GSM293060 61_C034.1N.R9N3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8 97.0 GSM293480 66_C092.1R.R9R1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8 97.0 GSM293789 33_3058.2D.R9D1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7 96.8 GSM209591 mock_0hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.6 96.7 GSM292192 53-1026.1A.R014P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6 96.7 GSM292675 25_1402.1J.R249P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.61 0 977 Gma.3341.1.S1_at BQ299022 - - 1e-29 At4g28860 ckl4 (Casein Kinase I-like 4) C.G. S.X.
0.35 2e-33 143 Gma.15087.1.S1_at BI968833 - - 5e+0 At1g01530 AGL28 (AGAMOUS-LIKE 28) C.G. S.X.
0.01 1e+0 34 PsAffx.C89000059_at PsAffx.C89000059 - - 2e-1 At4g21230 protein kinase family protein C.G. S.X.
0.02 1e+0 34 GmaAffx.8527.1.S1_at BU546273 - - 3e-22 At2g14255 zinc ion binding C.G. S.X.
0.02 1e+0 34 Gma.16334.1.S1_x_at CD407877 - - 3e-2 At2g30570 PSBW (PHOTOSYSTEM II REACTION CENTER W) C.G. S.X.
0.02 1e+0 34 Gma.16334.1.S1_at CD407877 - - 3e-2 At2g30570 PSBW (PHOTOSYSTEM II REACTION CENTER W) C.G. S.X.
0.05 1e+0 34 Gma.13920.1.A1_at CD410138 - - 7e-1 At5g57750 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 5e+0 32 PsAffx.CL143Contig1_at PsAffx.CL143Contig1 - - 1e-14 At1g50010 TUA2 C.G. S.X.
0.00 5e+0 32 PsAffx.C81000013_at PsAffx.C81000013 - - 3e-3 At1g20920 DEAD box RNA helicase, putative C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 4e+0 32 Arabidopsis thaliana At5g42235 2746178 Expressed protein Encodes a defensin-like (DEFL) family protein. - - - C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig25203_at Contig25203 - - 2e-5 At1g26160 metal-dependent phosphohydrolase HD domain-containing protein C.G. S.X.
0.03 2e+0 34 Oryza sativa Os05g0337400 AU198228 - Heavy metal transport/detoxification proteindomain containing protein 6e+0 At5g64150 methylase family protein C.G. S.X.
0.07 4e-4 46 Populus trichocarpa PtpAffx.146495.1.A1_at CV272591 hypothetical protein - 4e-1 At5g47960 ATRABA4C C.G. S.X.
0.04 3e-1 36 Triticum aestivum TaAffx.65152.1.S1_at BJ259013 - - 1e+0 At3g62840 - C.G. S.X.
0.04 2e-8 57 Vitis vinifera 1620908_at CD013688 hypothetical protein LOC100247344 - 3e-102 At4g28880 ckl3 (Casein Kinase I-like 3) C.G. S.X.
0.04 2e+0 32 Zea mays ZmAffx.996.1.A1_at AI857152 - - 3e+0 At5g02230 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage