CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.90596.1.S1_s_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 86.1 GmaAffx.90596.1.S1_s_at CF806321 - - 5e-3 At4g33985 unknown protein S.X. H.G.
0.54 74.8 Gma.10915.3.S1_s_at BG154267 - - 4e-22 At2g33120 SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) S.X. H.G.
0.46 65.5 GmaAffx.91844.1.S1_s_at CF807569 - - 1e+0 At2g23320 WRKY15 S.X. H.G.
0.37 51.7 Gma.17976.2.S1_at BU763811 - - 4e+0 At5g52040 ATRSP41 S.X. H.G.
0.36 50.8 Gma.16711.3.S1_a_at AI437814 - - 7e-2 At5g27541 S.X. H.G.
0.35 48.6 Gma.16711.1.S1_at CD415330 - - 1e-1 At5g27541 S.X. H.G.
0.31 42.2 Gma.1642.2.S1_a_at BM143182 - - 4e-12 At2g37570 SLT1 (sodium- and lithium-tolerant 1) S.X. H.G.
0.30 40.4 GmaAffx.74664.1.S1_at BU965032 - - 1e-2 At1g54170 CID3 (CTC-Interacting Domain 3) S.X. H.G.
0.27 35.7 GmaAffx.75492.1.S1_at BG507702 - - 4e-34 At2g23140 binding / ubiquitin-protein ligase S.X. H.G.
0.23 29.9 GmaAffx.46426.1.S1_at BM524901 - - 3e-3 At1g02010 SEC1A (SIMILAR TO ELECTRON CAREER 1A) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.5 98.7 GSM292768 30_C198.1K.R9K3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.4 98.6 GSM292890 65_C202.1L.R9L1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6 98.3 GSM292653 7_C156.1I.V7I2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.5 98.3 GSM293060 61_C034.1N.R9N3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2 98.1 GSM293663 88_2050.2B.R124P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2 98.1 GSM294341 89_2432.2I.R296P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1 98.1 GSM293789 33_3058.2D.R9D1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1 98.1 GSM292551 63_1298.1H.R188P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0 98.0 GSM293835 75_2148.2D.R010P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0 98.0 GSM293659 84_2078.2B.R246P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.58 0 908 Gma.1362.2.S1_at BU765611 - - 1e-2 At4g33985 unknown protein C.G. S.X.
0.83 9e-166 583 GmaAffx.92107.1.S1_s_at CF807832 - - 7e-2 At3g04640 glycine-rich protein C.G. S.X.
0.69 3e-162 571 Gma.1362.1.S1_at BQ297153 - - 8e-3 At4g33985 unknown protein C.G. S.X.
0.07 5e-4 46 GmaAffx.85871.1.S1_at BE806323 - - 1e-9 At4g33985 unknown protein C.G. S.X.
0.04 3e-2 40 HgAffx.16354.1.S1_at CB280002 - - 6e-1 At5g53950 CUC2 (CUP-SHAPED COTYLEDON 2) C.G. S.X.
0.02 1e-1 38 PsAffx.C88000056_at PsAffx.C88000056 - - 1e+1 At5g36970 NHL25 (NDR1/HIN1-LIKE 25) C.G. S.X.
0.02 1e-1 38 PsAffx.C62000035_at PsAffx.C62000035 - - 8e+0 At5g18790 ribosomal protein L33 family protein C.G. S.X.
0.02 1e-1 38 PsAffx.C179000021_at PsAffx.C179000021 - - 3e-2 At1g08500 plastocyanin-like domain-containing protein C.G. S.X.
0.01 1e-1 38 PsAffx.C115000003_at PsAffx.C115000003 - - 2e+0 At3g52860 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 5e-3 42 Arabidopsis thaliana At4g33985 829545 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P - - - C.G. S.X.
0.07 7e-7 54 Hordeum vulgare Contig12932_at Contig12932 - - 3e-2 At4g33985 unknown protein C.G. S.X.
0.07 4e-5 50 Oryza sativa Os02g0766600 AK059779.1 - Conserved hypothetical protein 5e-1 At1g55210 disease resistance response C.G. S.X.
0.07 8e-9 61 Populus trichocarpa Ptp.5579.1.A1_at CV270590 hypothetical protein - 3e-5 At4g33985 unknown protein C.G. S.X.
0.04 5e-3 42 Triticum aestivum TaAffx.25894.1.S1_at CA694572 - - 5e-1 At1g01990 - C.G. S.X.
0.22 1e-13 75 Vitis vinifera 1619240_at CB348525 hypothetical protein LOC100250717 - 6e-7 At4g33985 unknown protein C.G. S.X.
0.11 2e-4 46 Zea mays Zm.16829.2.S1_at AY105706.1 hypothetical protein LOC100277102 - 5e-4 At4g33985 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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