CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.90559.1.S1_x_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 86.1 GmaAffx.90559.1.S1_x_at CF806284 - - 2e-23 At3g48890 ATMP2 S.X. H.G.
0.60 80.7 GmaAffx.42255.1.S1_s_at BQ612697 - - 3e+0 At2g04925 - S.X. H.G.
0.50 71.7 Gma.2650.2.S1_at BG882263 - - 2e+0 At2g19730 60S ribosomal protein L28 (RPL28A) S.X. H.G.
0.50 71.7 GmaAffx.90559.1.S1_s_at CF806284 - - 2e-23 At3g48890 ATMP2 S.X. H.G.
0.50 71.7 GmaAffx.90559.1.S1_at CF806284 - - 2e-23 At3g48890 ATMP2 S.X. H.G.
0.08 11.0 GmaAffx.1306.2.S1_at BE801081 - - 3e-24 At1g49820 ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.8 98.4 GSM293077 77_1077.1N.R046L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2 98.1 GSM309557 storage protein suppression expt, RNAi biol rep1, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
5.0 98.0 GSM309531 storage protein suppression expt, RNAi biol rep2, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
4.9 98.0 GSM309530 storage protein suppression expt, RNAi biol rep2, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
4.5 97.7 GSM244916 4_SLO.I3U1.CEL, Experimental replicate 1 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
4.3 97.5 GSM292923 95_1465.1L.R283L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0 97.2 GSM309529 storage protein suppression expt, RNAi biol rep1, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
3.7 96.8 GSM294667 39_3219.2M.SLM1U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4 96.4 GSM293378 63_C077.1Q.SLQ1L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4 96.4 GSM293369 55_1557.1Q.R126L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 916 GmaAffx.90559.1.S1_s_at CF806284 - - 2e-23 At3g48890 ATMP2 C.G. S.X.
1.00 0 916 GmaAffx.90559.1.S1_at CF806284 - - 2e-23 At3g48890 ATMP2 C.G. S.X.
0.54 0 799 Gma.2849.2.S1_a_at BF009344 - - 1e-32 At3g48890 ATMP2 C.G. S.X.
0.54 0 799 Gma.2849.2.S1_at BF009344 - - 1e-32 At3g48890 ATMP2 C.G. S.X.
0.39 3e-97 355 Gma.1144.1.S1_a_at CD405843 - - 5e-38 At3g48890 ATMP2 C.G. S.X.
0.39 3e-97 355 Gma.1144.1.S1_at CD405843 - - 5e-38 At3g48890 ATMP2 C.G. S.X.
0.44 2e-92 339 Gma.1144.2.S1_at BE821744 - - 3e-42 At3g48890 ATMP2 C.G. S.X.
0.04 2e-2 40 Gma.2849.1.S1_at CD418012 - - 1e-3 At5g52240 MSBP1 (membrane steroid binding protein 1) C.G. S.X.
0.01 8e-2 38 PsAffx.C24000013_at PsAffx.C24000013 - - 1e-3 At3g23130 SUP (SUPERMAN) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.37 2e-23 109 Arabidopsis thaliana At3g48890 824050 ATMP2 putative progesterone-binding protein homolog (Atmp2) mRNA, - - - C.G. S.X.
0.18 6e-34 143 Hordeum vulgare Contig3554_at Contig3554 - - 6e-13 At3g48890 ATMP2 C.G. S.X.
0.20 7e-37 155 Oryza sativa Os10g0502600 AK069511.1 - Cytochrome b5 domain containing protein 4e-26 At3g48890 ATMP2 C.G. S.X.
0.18 1e-12 73 Populus trichocarpa PtpAffx.213011.1.S1_at pmrna25442 hypothetical protein - 2e-12 At3g48890 ATMP2 C.G. S.X.
0.23 5e-24 111 Triticum aestivum Ta.6101.2.S1_a_at CA697971 - - 3e-16 At3g48890 ATMP2 C.G. S.X.
0.47 9e-29 125 Vitis vinifera 1609309_at CF568890 - - 4e-43 At3g48890 ATMP2 C.G. S.X.
0.20 2e-27 121 Zea mays Zm.14411.2.S1_at AY104410.1 membrane steroid-binding protein 1 - 6e-10 At3g48890 ATMP2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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