CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.90539.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 78.2 GmaAffx.90539.1.S1_at CF806264 - - 4e-1 At3g15680 zinc finger (Ran-binding) family protein S.X. H.G.
0.59 79.5 GmaAffx.90539.1.S1_x_at CF806264 - - 4e-1 At3g15680 zinc finger (Ran-binding) family protein S.X. H.G.
0.40 57.1 GmaAffx.68754.1.S1_at BE474746 - - 9e-1 At2g34050 - S.X. H.G.
0.25 32.6 GmaAffx.72944.1.S1_x_at BI892899 3-ketoacyl-CoA thiolase - 7e-7 At5g48880 PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2) S.X. H.G.
0.23 29.9 GmaAffx.72944.1.S1_at BI892899 3-ketoacyl-CoA thiolase - 7e-7 At5g48880 PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2) S.X. H.G.
0.13 16.3 GmaAffx.93201.1.S1_at CF807687 - - 1e-1 At1g48500 JAZ4 (JASMONATE-ZIM-DOMAIN PROTEIN 4) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.0 99.7 GSM244916 4_SLO.I3U1.CEL, Experimental replicate 1 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
9.6 99.2 GSM292524 39_C137.1H.SLH2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.4 99.1 GSM293980 35_3101.2F.SLF2U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.1 98.8 GSM244891 36_SLO.I3L1.CEL, Experimental replicate 1 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
7.0 98.8 GSM292842 21_1443.1L.R271L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.0 98.8 GSM293850 89_3061.2D.SLD2U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.7 98.7 GSM292379 52_C095.1F.SLF1U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.5 98.7 GSM292838 18_C211.1L.SLL3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.3 98.6 GSM293319 9_C059.1P.SLP1L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.2 98.6 GSM293840 7_3061.2D.SLD2L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.97 5e-128 456 GmaAffx.90539.1.S1_x_at CF806264 - - 4e-1 At3g15680 zinc finger (Ran-binding) family protein C.G. S.X.
0.20 3e-83 307 Gma.3543.1.S1_at BE822399 - - 3e-19 At1g44350 ILL6 C.G. S.X.
0.02 2e-1 36 PsAffx.C4000163_at PsAffx.C4000163 - - 2e+1 At4g30840 WD-40 repeat protein family C.G. S.X.
0.04 6e-1 34 PsAffx.CL1329Contig1_at PsAffx.CL1329Contig1 - - 3e-1 At1g79580 SMB (SOMBRERO) C.G. S.X.
0.02 6e-1 34 PsAffx.C73000055_at PsAffx.C73000055 - - 9e-3 At2g14835 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 6e-1 34 PsAffx.C127000027_at PsAffx.C127000027 - - 3e-1 At3g23230 ethylene-responsive factor, putative C.G. S.X.
0.05 6e-1 34 GmaAffx.91177.1.S1_at CF806902 - - 2e-8 At4g28440 DNA-binding protein-related C.G. S.X.
0.05 6e-1 34 GmaAffx.91177.1.S1_s_at CF806902 - - 2e-8 At4g28440 DNA-binding protein-related C.G. S.X.
0.04 6e-1 34 Gma.1958.1.S1_at AW309336 - - 2e-6 At4g28440 DNA-binding protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 4e-1 34 Arabidopsis thaliana At3g15680 820811 zinc finger (Ran-binding) family protein F:binding, zinc ion binding;P:biological_process unknown;C:intracellular;MPOFB - - - C.G. S.X.
0.04 2e-1 34 Hordeum vulgare Contig13438_at Contig13438 - - 5e+0 At2g13623 unknown protein C.G. S.X.
0.05 6e-2 38 Oryza sativa OsAffx.2547.1.S1_at - - - 0 C.G. S.X.
0.05 2e+0 32 Populus trichocarpa PtpAffx.85779.1.S1_at CK107507 hypothetical protein - 5e-18 At3g26670 - C.G. S.X.
0.06 5e-1 34 Triticum aestivum TaAffx.91497.1.S1_at BJ315476 - - 3e+0 At5g09690 magnesium transporter CorA-like family protein (MRS2-7) C.G. S.X.
0.04 5e-1 32 Vitis vinifera 1622354_at CF414455 hypothetical protein LOC100259497 - 4e+0 At4g32690 GLB3 C.G. S.X.
0.04 2e-1 34 Zea mays Zm.4164.1.A1_x_at BM079246 - - 5e+0 At3g01860 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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