Gene omics information

Query gene ID	GmaAffx.90135.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.90135.1.S1_s_at	CF805860	-	-	1e-3	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	S.X.	H.G.	Please select
0.91	98.6	GmaAffx.93214.1.S1_at	CF808939	-	-	7e+0	At5g55650	unknown protein	S.X.	H.G.	Please select
0.83	92.5	GmaAffx.18523.1.S1_at	BI701091	-	-	9e-7	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	S.X.	H.G.	Please select
0.71	87.8	GmaAffx.85652.2.S1_at	BM307988	-	-	4e-18	At1g67100	LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40)	S.X.	H.G.	Please select
0.63	82.9	GmaAffx.92313.1.S1_s_at	CF808038	-	-	9e-1	At1g14700	PAP3 (PURPLE ACID PHOSPHATASE 3)	S.X.	H.G.	Please select
0.47	66.6	Gma.4819.3.S1_s_at	CA783243	-	-	3e-16	At2g36530	LOS2	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.6	99.9	GSM244916	4_SLO.I3U1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
25.4	99.8	GSM293130	43_C041.1O.V7O1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
23.4	99.8	GSM244891	36_SLO.I3L1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
22.4	99.8	GSM244910	40_SLO.I3L4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
21.5	99.8	GSM294382	41_3165.2J.V7J1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
19.1	99.7	GSM292289	36_C081.1E.SLE2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
19.1	99.7	GSM292330	77_C077.1E.SLE1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
18.5	99.7	GSM293249	36_C055.1P.V7P1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
18.2	99.7	GSM293250	37_C061.1P.SLP2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
18.2	99.7	GSM244806	17_CON.I3L4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1308	GmaAffx.90135.1.S1_at	CF805860	-	-	1e-3	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	C.G.	S.X.	Please select
0.25	2e-18	93	Gma.3881.2.S1_x_at	AW349366	-	-	4e-29	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	C.G.	S.X.	Please select
0.25	2e-18	93	Gma.3881.2.S1_at	AW349366	-	-	4e-29	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	C.G.	S.X.	Please select
0.09	1e-13	77	GmaAffx.93214.1.S1_at	CF808939	-	-	7e+0	At5g55650	unknown protein	C.G.	S.X.	Please select
0.16	2e-12	73	Gma.3881.1.S1_at	X92437.1	-	-	8e-23	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	C.G.	S.X.	Please select
0.16	2e-12	73	Gma.3881.1.S1_s_at	X92437.1	-	-	8e-23	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	C.G.	S.X.	Please select
0.06	1e-1	38	GmaAffx.33611.1.S1_at	BU765780	-	-	3e-3	At4g12320	CYP706A6	C.G.	S.X.	Please select
0.03	5e-1	36	Gma.9941.1.S1_at	BG726837	-	-	9e-1	At2g02515	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.CL1250Contig1_at	PsAffx.CL1250Contig1	-	-	2e+0	At4g22230	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	1e-3	44	Arabidopsis thaliana	At2g30490	817599	C4H (CINNAMATE-4-HYDROXYLASE)	Encodes a cinnamate-4-hydroxylase.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	3e+0	32	Hordeum vulgare	HV_CEb0007B08r2_x_at	HV_CEb0007B08r2	-	-	3e+0	At4g00585	unknown protein	C.G.	S.X.	Please select
0.13	7e-10	65	Oryza sativa	Os02g0467600	AK072588.1	-	Cinnamate 4-hydroxylase CYP73	1e-2	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.27	4e-26	119	Populus trichocarpa	PtpAffx.12353.1.A1_at	CX653443	trans-cinnamate 4-monooxygenase	-	6e-10	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.13	9e-5	48	Triticum aestivum	Ta.21061.1.S1_at	CA641989	-	-	3e-5	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	C.G.	S.X.	Please select
0.04	2e-2	38	Vitis vinifera	1610325_at	CA817476	hypothetical LOC100241660	-	5e+0	At5g17795	unknown protein	C.G.	S.X.	Please select
0.05	1e-1	36	Zea mays	Zm.7134.1.S1_at	CF634276	hypothetical protein LOC100272801 /// trans-cinnamate 4-monooxygenase	-	1e-18	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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