CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.9006.2.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.29 39.0 GmaAffx.9006.2.S1_at BG789532 - - 2e-4 At4g24540 AGL24 (AGAMOUS-LIKE 24) S.X. H.G.
0.33 46.1 Gma.344.1.A1_at AI443303 - - 1e+0 At2g01290 ribose-5-phosphate isomerase S.X. H.G.
0.30 40.4 Gma.9703.1.S1_at BM085082 - - 1e-13 At2g46220 unknown protein S.X. H.G.
0.25 32.6 Gma.13490.1.S1_at CA937905 - - 2e-19 At5g47040 LON2 (LON PROTEASE 2) S.X. H.G.
0.21 26.6 GmaAffx.74585.1.S1_at BU763686 - - 2e-1 At4g26170 unknown protein S.X. H.G.
0.13 16.3 GmaAffx.75708.1.S1_at BF599014 - - 8e-1 At3g50070 CYCD3 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
48.1 99.9 GSM209583 resistant_6hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
31.8 99.9 GSM209586 susceptible_12hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
29.5 99.8 GSM209582 mock_0hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
27.8 99.8 GSM209584 susceptible_6hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
26.8 99.8 GSM209596 resistant_24hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
26.2 99.8 GSM209594 resistant_12hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
25.7 99.8 GSM209597 susceptible_24hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
23.7 99.8 GSM209585 resistant_12hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
22.6 99.8 GSM209577 susceptible_12hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
20.2 99.7 GSM209588 susceptible_24hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-5 50 GmaAffx.79004.1.S1_at BU761215 MADS-box protein - 2e-17 At4g18960 AG (AGAMOUS) C.G. S.X.
0.15 1e-3 44 GmaAffx.76494.1.S1_at AW309024 - - 7e-20 At2g03710 SEP4 (SEPALLATA 4) C.G. S.X.
0.04 2e-2 40 GmaAffx.73009.2.S1_at BI321576 WRKY61 protein - 6e-3 At2g21900 WRKY59 C.G. S.X.
0.08 2e-2 40 Gma.16618.1.S1_at BE330897 SOC1 - 4e-12 At2g45660 AGL20 (AGAMOUS-LIKE 20) C.G. S.X.
0.01 3e-1 36 PsAffx.C20000073_at PsAffx.C20000073 - - 4e-1 At4g02890 UBQ14 C.G. S.X.
0.01 1e+0 34 PsAffx.C4000123_at PsAffx.C4000123 - - 3e-1 At1g32150 bZIP transcription factor family protein C.G. S.X.
0.08 1e+0 34 GmaAffx.57956.1.S1_at BQ454007 - - 1e-33 At5g60910 AGL8 (agamous-like 8) C.G. S.X.
0.07 1e+0 34 GmaAffx.55740.1.S1_at BI497772 - - 4e-6 At2g22540 SVP (SHORT VEGETATIVE PHASE) C.G. S.X.
0.04 1e+0 34 Gma.15776.1.A1_at CD401640 - - 8e-1 At1g15165 U-box domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 2e-4 46 Arabidopsis thaliana At4g24540 828556 AGL24 (AGAMOUS-LIKE 24) Encodes a MADS-box protein involved in flowering. Regulates the expression of SOC1 and is also upregulated by SOC1. Binds with IMK3 kinase domain. Phosphorylated by IMK3; likely to be a target for IMK3 kinase domain. - - - C.G. S.X.
0.05 4e-1 34 Hordeum vulgare HVSMEf0010N18r2_at HVSMEf0010N18r2 - - 7e+0 At5g60950 COBL5 (COBRA-LIKE PROTEIN 5 PRECURSOR) C.G. S.X.
0.15 4e-1 36 Oryza sativa OsAffx.12789.1.A1_at - - - 0 C.G. S.X.
0.14 2e-23 109 Populus trichocarpa Ptp.2578.1.S1_at AY501392.1 MADS9, AGL24 mads-box transcription factor - 2e-28 At4g24540 AGL24 (AGAMOUS-LIKE 24) C.G. S.X.
0.04 1e+1 30 Triticum aestivum TaAffx.64486.1.A1_at BJ295278 - - 3e+0 At2g38880 NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1) C.G. S.X.
0.07 6e-2 36 Vitis vinifera 1619977_at BQ794993 hypothetical protein LOC100251508 - 3e-27 At2g22540 SVP (SHORT VEGETATIVE PHASE) C.G. S.X.
0.05 6e-3 40 Zea mays Zm.14827.1.S1_at AJ430635.1 m21 protein - 1e-1 At1g28200 FIP1 (FH INTERACTING PROTEIN 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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